Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04890 and SGL_RS04895 are separated by 66 nucleotides SGL_RS04895 and SGL_RS04900 are separated by 8 nucleotides SGL_RS04900 and SGL_RS04905 are separated by 28 nucleotides SGL_RS04905 and SGL_RS19435 are separated by 97 nucleotides SGL_RS19435 and SGL_RS04910 are separated by 295 nucleotides
SGL_RS04890: SGL_RS04890 - hypothetical protein, at 643,144 to 643,482
_RS04890
SGL_RS04895: SGL_RS04895 - S-formylglutathione hydrolase, at 643,549 to 644,379
_RS04895
SGL_RS04900: SGL_RS04900 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 644,388 to 645,497
_RS04900
SGL_RS04905: SGL_RS04905 - tRNA-Arg, at 645,526 to 645,598
_RS04905
SGL_RS19435: SGL_RS19435 - hypothetical protein, at 645,696 to 645,833
_RS19435
SGL_RS04910: SGL_RS04910 - SwmB domain-containing protein, at 646,129 to 658,047
_RS04910
Position (kb) 644
645
646 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 643.823 kb on + strand, within SGL_RS04895 at 643.866 kb on + strand, within SGL_RS04895 at 644.053 kb on - strand, within SGL_RS04895 at 644.053 kb on - strand, within SGL_RS04895 at 644.095 kb on + strand, within SGL_RS04895 at 644.126 kb on + strand, within SGL_RS04895 at 644.313 kb on - strand at 644.313 kb on - strand at 644.432 kb on + strand at 644.433 kb on + strand at 644.681 kb on - strand, within SGL_RS04900 at 644.681 kb on - strand, within SGL_RS04900 at 644.693 kb on - strand, within SGL_RS04900 at 644.719 kb on - strand, within SGL_RS04900 at 644.719 kb on - strand, within SGL_RS04900 at 644.723 kb on + strand, within SGL_RS04900 at 644.737 kb on - strand, within SGL_RS04900 at 644.876 kb on + strand, within SGL_RS04900 at 644.896 kb on - strand, within SGL_RS04900 at 644.918 kb on - strand, within SGL_RS04900 at 644.964 kb on - strand, within SGL_RS04900 at 644.966 kb on - strand, within SGL_RS04900 at 644.966 kb on - strand, within SGL_RS04900 at 644.969 kb on - strand, within SGL_RS04900 at 644.971 kb on - strand, within SGL_RS04900 at 644.995 kb on - strand, within SGL_RS04900 at 645.089 kb on - strand, within SGL_RS04900 at 645.096 kb on + strand, within SGL_RS04900 at 645.104 kb on - strand, within SGL_RS04900 at 645.156 kb on + strand, within SGL_RS04900 at 645.161 kb on + strand, within SGL_RS04900 at 645.173 kb on - strand, within SGL_RS04900 at 645.186 kb on - strand, within SGL_RS04900 at 645.232 kb on + strand, within SGL_RS04900 at 645.278 kb on - strand, within SGL_RS04900 at 645.315 kb on + strand, within SGL_RS04900 at 645.323 kb on - strand, within SGL_RS04900 at 645.367 kb on - strand, within SGL_RS04900 at 645.691 kb on - strand at 645.701 kb on + strand at 645.724 kb on - strand, within SGL_RS19435 at 645.966 kb on - strand at 645.968 kb on + strand at 646.007 kb on + strand at 646.165 kb on + strand at 646.173 kb on - strand at 646.173 kb on - strand at 646.173 kb on - strand at 646.228 kb on + strand at 646.236 kb on - strand at 646.401 kb on - strand at 646.479 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 643,823 + SGL_RS04895 0.33 -0.3 643,866 + SGL_RS04895 0.38 +0.1 644,053 - SGL_RS04895 0.61 +0.6 644,053 - SGL_RS04895 0.61 +0.2 644,095 + SGL_RS04895 0.66 +0.5 644,126 + SGL_RS04895 0.69 -0.4 644,313 - +0.1 644,313 - +0.0 644,432 + +0.0 644,433 + -0.1 644,681 - SGL_RS04900 0.26 -0.0 644,681 - SGL_RS04900 0.26 -0.5 644,693 - SGL_RS04900 0.27 -0.0 644,719 - SGL_RS04900 0.30 +0.5 644,719 - SGL_RS04900 0.30 +0.4 644,723 + SGL_RS04900 0.30 -0.2 644,737 - SGL_RS04900 0.31 -0.1 644,876 + SGL_RS04900 0.44 -0.5 644,896 - SGL_RS04900 0.46 -2.9 644,918 - SGL_RS04900 0.48 +1.6 644,964 - SGL_RS04900 0.52 -0.7 644,966 - SGL_RS04900 0.52 +0.6 644,966 - SGL_RS04900 0.52 -0.5 644,969 - SGL_RS04900 0.52 +0.1 644,971 - SGL_RS04900 0.53 +0.6 644,995 - SGL_RS04900 0.55 -0.5 645,089 - SGL_RS04900 0.63 +0.0 645,096 + SGL_RS04900 0.64 +0.2 645,104 - SGL_RS04900 0.65 +0.2 645,156 + SGL_RS04900 0.69 +1.2 645,161 + SGL_RS04900 0.70 -0.4 645,173 - SGL_RS04900 0.71 +0.4 645,186 - SGL_RS04900 0.72 -0.4 645,232 + SGL_RS04900 0.76 -0.2 645,278 - SGL_RS04900 0.80 -0.2 645,315 + SGL_RS04900 0.84 +0.4 645,323 - SGL_RS04900 0.84 -0.2 645,367 - SGL_RS04900 0.88 -0.7 645,691 - -0.4 645,701 + +0.3 645,724 - SGL_RS19435 0.20 -0.3 645,966 - +0.5 645,968 + -0.0 646,007 + +0.2 646,165 + -0.3 646,173 - -0.2 646,173 - -0.7 646,173 - +0.3 646,228 + -0.6 646,236 - -0.6 646,401 - +0.1 646,479 - +0.5
Or see this region's nucleotide sequence