Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS00355 and SGL_RS00360 are separated by 203 nucleotides SGL_RS00360 and SGL_RS00365 are separated by 112 nucleotides
SGL_RS00355: SGL_RS00355 - ion channel, at 76,050 to 76,988
_RS00355
SGL_RS00360: SGL_RS00360 - glucose 1-dehydrogenase, at 77,192 to 77,944
_RS00360
SGL_RS00365: SGL_RS00365 - alpha/beta hydrolase, at 78,057 to 78,881
_RS00365
Position (kb) 77
78 Strain fitness (log2 ratio) -2
-1
0
1 at 76.513 kb on + strand, within SGL_RS00355 at 76.523 kb on - strand, within SGL_RS00355 at 76.848 kb on + strand, within SGL_RS00355 at 76.887 kb on - strand, within SGL_RS00355 at 77.124 kb on - strand at 77.149 kb on - strand at 77.173 kb on + strand at 77.185 kb on + strand at 77.193 kb on - strand at 77.213 kb on - strand at 77.355 kb on + strand, within SGL_RS00360 at 77.389 kb on + strand, within SGL_RS00360 at 77.420 kb on + strand, within SGL_RS00360 at 77.428 kb on - strand, within SGL_RS00360 at 77.428 kb on - strand, within SGL_RS00360 at 77.576 kb on + strand, within SGL_RS00360 at 77.827 kb on - strand, within SGL_RS00360 at 77.852 kb on + strand, within SGL_RS00360 at 77.987 kb on + strand at 77.989 kb on + strand at 78.085 kb on + strand at 78.103 kb on - strand at 78.110 kb on + strand at 78.133 kb on + strand at 78.164 kb on + strand, within SGL_RS00365 at 78.326 kb on - strand, within SGL_RS00365 at 78.523 kb on + strand, within SGL_RS00365 at 78.525 kb on + strand, within SGL_RS00365 at 78.533 kb on - strand, within SGL_RS00365 at 78.589 kb on - strand, within SGL_RS00365 at 78.705 kb on + strand, within SGL_RS00365 at 78.770 kb on + strand, within SGL_RS00365 at 78.787 kb on + strand, within SGL_RS00365 at 78.834 kb on - strand at 78.836 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 76,513 + SGL_RS00355 0.49 +0.2 76,523 - SGL_RS00355 0.50 +0.1 76,848 + SGL_RS00355 0.85 -0.2 76,887 - SGL_RS00355 0.89 +0.4 77,124 - -0.3 77,149 - -0.2 77,173 + -0.3 77,185 + -0.8 77,193 - +0.2 77,213 - +0.1 77,355 + SGL_RS00360 0.22 -1.0 77,389 + SGL_RS00360 0.26 -0.3 77,420 + SGL_RS00360 0.30 +0.8 77,428 - SGL_RS00360 0.31 -0.0 77,428 - SGL_RS00360 0.31 -0.0 77,576 + SGL_RS00360 0.51 -0.2 77,827 - SGL_RS00360 0.84 -0.4 77,852 + SGL_RS00360 0.88 -2.2 77,987 + -0.4 77,989 + +0.4 78,085 + -0.3 78,103 - -0.4 78,110 + -0.4 78,133 + +0.3 78,164 + SGL_RS00365 0.13 +1.5 78,326 - SGL_RS00365 0.33 -0.4 78,523 + SGL_RS00365 0.56 -0.9 78,525 + SGL_RS00365 0.57 +0.4 78,533 - SGL_RS00365 0.58 +0.9 78,589 - SGL_RS00365 0.64 -0.2 78,705 + SGL_RS00365 0.79 -0.1 78,770 + SGL_RS00365 0.86 +0.2 78,787 + SGL_RS00365 0.88 -0.5 78,834 - +0.4 78,836 - -0.5
Or see this region's nucleotide sequence