Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS20155

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12050 and SGL_RS20155 are separated by 138 nucleotidesSGL_RS20155 and SGL_RS12055 overlap by 2 nucleotidesSGL_RS12055 and SGL_RS12060 are separated by 17 nucleotides SGL_RS12050: SGL_RS12050 - DUF1517 domain-containing protein, at 2,152,932 to 2,153,933 _RS12050 SGL_RS20155: SGL_RS20155 - hypothetical protein, at 2,154,072 to 2,154,206 _RS20155 SGL_RS12055: SGL_RS12055 - DUF6439 family protein, at 2,154,205 to 2,154,498 _RS12055 SGL_RS12060: SGL_RS12060 - phosphoribosylanthranilate isomerase, at 2,154,516 to 2,155,172 _RS12060 Position (kb) 2154 2155Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2153.077 kb on + strand, within SGL_RS12050at 2153.388 kb on + strand, within SGL_RS12050at 2153.393 kb on - strand, within SGL_RS12050at 2153.393 kb on - strand, within SGL_RS12050at 2153.457 kb on + strand, within SGL_RS12050at 2153.498 kb on - strand, within SGL_RS12050at 2153.499 kb on - strand, within SGL_RS12050at 2153.548 kb on - strand, within SGL_RS12050at 2153.568 kb on - strand, within SGL_RS12050at 2153.745 kb on + strand, within SGL_RS12050at 2153.745 kb on + strand, within SGL_RS12050at 2153.825 kb on - strand, within SGL_RS12050at 2153.927 kb on + strandat 2153.928 kb on + strandat 2153.936 kb on - strandat 2154.170 kb on - strand, within SGL_RS20155at 2154.260 kb on + strand, within SGL_RS12055at 2154.362 kb on - strand, within SGL_RS12055at 2154.403 kb on + strand, within SGL_RS12055at 2154.411 kb on - strand, within SGL_RS12055at 2154.411 kb on - strand, within SGL_RS12055at 2154.464 kb on + strand, within SGL_RS12055at 2154.550 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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2,153,077 + SGL_RS12050 0.14 -3.0
2,153,388 + SGL_RS12050 0.46 +2.0
2,153,393 - SGL_RS12050 0.46 +0.0
2,153,393 - SGL_RS12050 0.46 +0.3
2,153,457 + SGL_RS12050 0.52 -1.9
2,153,498 - SGL_RS12050 0.56 -0.8
2,153,499 - SGL_RS12050 0.57 +0.4
2,153,548 - SGL_RS12050 0.61 -2.1
2,153,568 - SGL_RS12050 0.63 +0.3
2,153,745 + SGL_RS12050 0.81 +0.3
2,153,745 + SGL_RS12050 0.81 +0.7
2,153,825 - SGL_RS12050 0.89 +1.3
2,153,927 + -1.0
2,153,928 + -2.3
2,153,936 - -0.9
2,154,170 - SGL_RS20155 0.73 +2.1
2,154,260 + SGL_RS12055 0.19 +2.2
2,154,362 - SGL_RS12055 0.53 +1.9
2,154,403 + SGL_RS12055 0.67 +2.1
2,154,411 - SGL_RS12055 0.70 +2.1
2,154,411 - SGL_RS12055 0.70 +1.9
2,154,464 + SGL_RS12055 0.88 +0.6
2,154,550 + +1.5

Or see this region's nucleotide sequence