Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18290

Experiment: medium light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS18285 and SGL_RS18290 are separated by 74 nucleotidesSGL_RS18290 and SGL_RS18295 are separated by 142 nucleotides SGL_RS18285: SGL_RS18285 - ABC transporter permease, at 3,551,159 to 3,552,382 _RS18285 SGL_RS18290: SGL_RS18290 - transcriptional repressor, at 3,552,457 to 3,552,954 _RS18290 SGL_RS18295: SGL_RS18295 - creatininase family protein, at 3,553,097 to 3,553,918 _RS18295 Position (kb) 3552 3553Strain fitness (log2 ratio) -1 0 1 2 3at 3551.478 kb on + strand, within SGL_RS18285at 3551.478 kb on + strand, within SGL_RS18285at 3551.604 kb on - strand, within SGL_RS18285at 3551.700 kb on + strand, within SGL_RS18285at 3551.738 kb on + strand, within SGL_RS18285at 3551.741 kb on - strand, within SGL_RS18285at 3551.907 kb on - strand, within SGL_RS18285at 3552.131 kb on + strand, within SGL_RS18285at 3552.167 kb on + strand, within SGL_RS18285at 3552.191 kb on - strand, within SGL_RS18285at 3552.366 kb on - strandat 3552.370 kb on + strandat 3552.370 kb on + strandat 3553.156 kb on + strandat 3553.351 kb on + strand, within SGL_RS18295at 3553.366 kb on - strand, within SGL_RS18295at 3553.392 kb on - strand, within SGL_RS18295at 3553.489 kb on - strand, within SGL_RS18295at 3553.598 kb on - strand, within SGL_RS18295at 3553.598 kb on - strand, within SGL_RS18295at 3553.656 kb on + strand, within SGL_RS18295

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
remove
3,551,478 + SGL_RS18285 0.26 +2.6
3,551,478 + SGL_RS18285 0.26 +2.3
3,551,604 - SGL_RS18285 0.36 +2.4
3,551,700 + SGL_RS18285 0.44 +3.0
3,551,738 + SGL_RS18285 0.47 +2.3
3,551,741 - SGL_RS18285 0.48 +2.5
3,551,907 - SGL_RS18285 0.61 +2.0
3,552,131 + SGL_RS18285 0.79 +1.2
3,552,167 + SGL_RS18285 0.82 +0.6
3,552,191 - SGL_RS18285 0.84 +2.1
3,552,366 - +2.8
3,552,370 + +0.1
3,552,370 + +1.3
3,553,156 + -0.3
3,553,351 + SGL_RS18295 0.31 -0.7
3,553,366 - SGL_RS18295 0.33 -0.8
3,553,392 - SGL_RS18295 0.36 +0.7
3,553,489 - SGL_RS18295 0.48 -0.4
3,553,598 - SGL_RS18295 0.61 +0.0
3,553,598 - SGL_RS18295 0.61 -0.2
3,553,656 + SGL_RS18295 0.68 -0.6

Or see this region's nucleotide sequence