Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS18260 and SGL_RS18270 are separated by 298 nucleotides SGL_RS18270 and SGL_RS18275 are separated by 149 nucleotides
SGL_RS18260: SGL_RS18260 - cyclic 2,3-diphosphoglycerate synthase, at 3,545,120 to 3,546,493
_RS18260
SGL_RS18270: SGL_RS18270 - family 10 glycosylhydrolase, at 3,546,792 to 3,548,315
_RS18270
SGL_RS18275: SGL_RS18275 - cyclic nucleotide-binding domain-containing protein, at 3,548,465 to 3,549,706
_RS18275
Position (kb)
3546
3547
3548
3549 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3545.925 kb on - strand, within SGL_RS18260 at 3545.944 kb on - strand, within SGL_RS18260 at 3546.001 kb on - strand, within SGL_RS18260 at 3546.029 kb on + strand, within SGL_RS18260 at 3546.198 kb on + strand, within SGL_RS18260 at 3546.232 kb on + strand, within SGL_RS18260 at 3546.297 kb on - strand, within SGL_RS18260 at 3546.504 kb on - strand at 3546.519 kb on - strand at 3546.536 kb on + strand at 3546.544 kb on - strand at 3547.048 kb on + strand, within SGL_RS18270 at 3548.080 kb on - strand, within SGL_RS18270 at 3548.108 kb on + strand, within SGL_RS18270 at 3548.118 kb on + strand, within SGL_RS18270 at 3548.133 kb on + strand, within SGL_RS18270 at 3548.504 kb on - strand at 3548.868 kb on + strand, within SGL_RS18275 at 3548.871 kb on - strand, within SGL_RS18275 at 3548.911 kb on + strand, within SGL_RS18275 at 3548.920 kb on + strand, within SGL_RS18275 at 3549.220 kb on + strand, within SGL_RS18275 at 3549.289 kb on - strand, within SGL_RS18275
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 3,545,925 - SGL_RS18260 0.59 -1.2 3,545,944 - SGL_RS18260 0.60 -0.4 3,546,001 - SGL_RS18260 0.64 -0.6 3,546,029 + SGL_RS18260 0.66 -0.6 3,546,198 + SGL_RS18260 0.78 +1.2 3,546,232 + SGL_RS18260 0.81 +1.4 3,546,297 - SGL_RS18260 0.86 -1.1 3,546,504 - +2.7 3,546,519 - -0.4 3,546,536 + -1.0 3,546,544 - -2.1 3,547,048 + SGL_RS18270 0.17 +0.7 3,548,080 - SGL_RS18270 0.85 -2.5 3,548,108 + SGL_RS18270 0.86 -1.9 3,548,118 + SGL_RS18270 0.87 -3.1 3,548,133 + SGL_RS18270 0.88 -1.8 3,548,504 - -0.6 3,548,868 + SGL_RS18275 0.32 -1.7 3,548,871 - SGL_RS18275 0.33 +0.3 3,548,911 + SGL_RS18275 0.36 +0.2 3,548,920 + SGL_RS18275 0.37 +1.4 3,549,220 + SGL_RS18275 0.61 -0.5 3,549,289 - SGL_RS18275 0.66 -2.7
Or see this region's nucleotide sequence