Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18050

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18040 and SGL_RS18045 are separated by 70 nucleotidesSGL_RS18045 and SGL_RS18050 are separated by 111 nucleotidesSGL_RS18050 and SGL_RS18055 are separated by 110 nucleotidesSGL_RS18055 and SGL_RS18060 are separated by 198 nucleotides SGL_RS18040: SGL_RS18040 - phasin family protein, at 3,507,027 to 3,507,452 _RS18040 SGL_RS18045: SGL_RS18045 - hypothetical protein, at 3,507,523 to 3,507,999 _RS18045 SGL_RS18050: SGL_RS18050 - tRNA pseudouridine(55) synthase TruB, at 3,508,111 to 3,509,001 _RS18050 SGL_RS18055: SGL_RS18055 - HAD family hydrolase, at 3,509,112 to 3,509,747 _RS18055 SGL_RS18060: SGL_RS18060 - S8 family serine peptidase, at 3,509,946 to 3,511,580 _RS18060 Position (kb) 3508 3509 3510Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 3507.248 kb on + strand, within SGL_RS18040at 3507.248 kb on + strand, within SGL_RS18040at 3507.249 kb on + strand, within SGL_RS18040at 3507.256 kb on - strand, within SGL_RS18040at 3507.263 kb on - strand, within SGL_RS18040at 3507.363 kb on + strand, within SGL_RS18040at 3507.486 kb on + strandat 3507.572 kb on + strand, within SGL_RS18045at 3507.697 kb on - strand, within SGL_RS18045at 3507.804 kb on + strand, within SGL_RS18045at 3507.892 kb on - strand, within SGL_RS18045at 3507.904 kb on - strand, within SGL_RS18045at 3507.927 kb on + strand, within SGL_RS18045at 3507.930 kb on - strand, within SGL_RS18045at 3507.935 kb on - strand, within SGL_RS18045at 3507.950 kb on - strand, within SGL_RS18045at 3508.138 kb on + strandat 3508.139 kb on - strandat 3508.267 kb on - strand, within SGL_RS18050at 3508.289 kb on - strand, within SGL_RS18050at 3508.312 kb on - strand, within SGL_RS18050at 3508.497 kb on + strand, within SGL_RS18050at 3508.703 kb on + strand, within SGL_RS18050at 3508.719 kb on + strand, within SGL_RS18050at 3508.798 kb on + strand, within SGL_RS18050at 3508.912 kb on + strand, within SGL_RS18050at 3508.980 kb on - strandat 3509.192 kb on - strand, within SGL_RS18055at 3509.197 kb on + strand, within SGL_RS18055at 3509.224 kb on - strand, within SGL_RS18055at 3509.240 kb on + strand, within SGL_RS18055at 3509.414 kb on + strand, within SGL_RS18055at 3509.750 kb on - strandat 3509.927 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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3,507,248 + SGL_RS18040 0.52 -1.0
3,507,248 + SGL_RS18040 0.52 -2.7
3,507,249 + SGL_RS18040 0.52 -2.0
3,507,256 - SGL_RS18040 0.54 -2.0
3,507,263 - SGL_RS18040 0.55 -2.4
3,507,363 + SGL_RS18040 0.79 +6.9
3,507,486 + -0.1
3,507,572 + SGL_RS18045 0.10 -0.0
3,507,697 - SGL_RS18045 0.36 +0.3
3,507,804 + SGL_RS18045 0.59 -0.5
3,507,892 - SGL_RS18045 0.77 -0.0
3,507,904 - SGL_RS18045 0.80 -0.1
3,507,927 + SGL_RS18045 0.85 +0.3
3,507,930 - SGL_RS18045 0.85 -1.9
3,507,935 - SGL_RS18045 0.86 +0.4
3,507,950 - SGL_RS18045 0.90 -0.2
3,508,138 + +4.9
3,508,139 - +5.6
3,508,267 - SGL_RS18050 0.18 +5.6
3,508,289 - SGL_RS18050 0.20 +4.8
3,508,312 - SGL_RS18050 0.23 +4.5
3,508,497 + SGL_RS18050 0.43 +5.8
3,508,703 + SGL_RS18050 0.66 +5.8
3,508,719 + SGL_RS18050 0.68 +5.3
3,508,798 + SGL_RS18050 0.77 +5.5
3,508,912 + SGL_RS18050 0.90 +6.0
3,508,980 - +5.3
3,509,192 - SGL_RS18055 0.13 +0.4
3,509,197 + SGL_RS18055 0.13 +0.3
3,509,224 - SGL_RS18055 0.18 +1.0
3,509,240 + SGL_RS18055 0.20 -0.0
3,509,414 + SGL_RS18055 0.47 -0.4
3,509,750 - +1.0
3,509,927 + -0.1

Or see this region's nucleotide sequence