Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16870

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16860 and SGL_RS16865 are separated by 18 nucleotidesSGL_RS16865 and SGL_RS16870 overlap by 4 nucleotidesSGL_RS16870 and SGL_RS16875 are separated by 106 nucleotidesSGL_RS16875 and SGL_RS16880 are separated by 4 nucleotides SGL_RS16860: SGL_RS16860 - small ribosomal subunit biogenesis GTPase RsgA, at 3,235,746 to 3,236,855 _RS16860 SGL_RS16865: SGL_RS16865 - sulfurtransferase TusA family protein, at 3,236,874 to 3,237,128 _RS16865 SGL_RS16870: SGL_RS16870 - molecular chaperone DnaJ, at 3,237,125 to 3,238,258 _RS16870 SGL_RS16875: SGL_RS16875 - crossover junction endodeoxyribonuclease RuvC, at 3,238,365 to 3,238,868 _RS16875 SGL_RS16880: SGL_RS16880 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 3,238,873 to 3,239,748 _RS16880 Position (kb) 3237 3238 3239Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3236.282 kb on + strand, within SGL_RS16860at 3236.297 kb on + strand, within SGL_RS16860at 3236.324 kb on - strand, within SGL_RS16860at 3236.382 kb on + strand, within SGL_RS16860at 3236.568 kb on - strand, within SGL_RS16860at 3236.651 kb on + strand, within SGL_RS16860at 3236.656 kb on + strand, within SGL_RS16860at 3236.857 kb on + strandat 3236.857 kb on + strandat 3236.922 kb on + strand, within SGL_RS16865at 3236.956 kb on - strand, within SGL_RS16865at 3237.134 kb on + strandat 3237.330 kb on + strand, within SGL_RS16870at 3238.982 kb on + strand, within SGL_RS16880

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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3,236,282 + SGL_RS16860 0.48 -2.8
3,236,297 + SGL_RS16860 0.50 -1.5
3,236,324 - SGL_RS16860 0.52 -2.9
3,236,382 + SGL_RS16860 0.57 -1.4
3,236,568 - SGL_RS16860 0.74 +0.2
3,236,651 + SGL_RS16860 0.82 -0.6
3,236,656 + SGL_RS16860 0.82 -2.8
3,236,857 + +1.7
3,236,857 + -0.9
3,236,922 + SGL_RS16865 0.19 +2.0
3,236,956 - SGL_RS16865 0.32 +5.0
3,237,134 + -0.0
3,237,330 + SGL_RS16870 0.18 +0.7
3,238,982 + SGL_RS16880 0.12 -0.8

Or see this region's nucleotide sequence