Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16770

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16765 and SGL_RS16770 are separated by 144 nucleotidesSGL_RS16770 and SGL_RS16775 are separated by 43 nucleotides SGL_RS16765: SGL_RS16765 - aldo/keto reductase, at 3,220,162 to 3,221,106 _RS16765 SGL_RS16770: SGL_RS16770 - LptF/LptG family permease, at 3,221,251 to 3,222,432 _RS16770 SGL_RS16775: SGL_RS16775 - asparagine--tRNA ligase, at 3,222,476 to 3,223,864 _RS16775 Position (kb) 3221 3222 3223Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3220.263 kb on - strand, within SGL_RS16765at 3220.308 kb on - strand, within SGL_RS16765at 3220.448 kb on + strand, within SGL_RS16765at 3220.458 kb on + strand, within SGL_RS16765at 3220.464 kb on + strand, within SGL_RS16765at 3220.663 kb on + strand, within SGL_RS16765at 3221.355 kb on + strandat 3221.384 kb on - strand, within SGL_RS16770at 3221.521 kb on - strand, within SGL_RS16770at 3221.583 kb on - strand, within SGL_RS16770at 3222.146 kb on - strand, within SGL_RS16770at 3222.184 kb on - strand, within SGL_RS16770at 3222.204 kb on - strand, within SGL_RS16770at 3222.348 kb on + strandat 3222.539 kb on - strandat 3222.540 kb on + strandat 3222.545 kb on + strandat 3222.610 kb on + strandat 3222.618 kb on - strand, within SGL_RS16775at 3222.618 kb on - strand, within SGL_RS16775at 3223.148 kb on + strand, within SGL_RS16775at 3223.211 kb on + strand, within SGL_RS16775at 3223.211 kb on + strand, within SGL_RS16775at 3223.241 kb on + strand, within SGL_RS16775at 3223.249 kb on + strand, within SGL_RS16775at 3223.257 kb on - strand, within SGL_RS16775at 3223.257 kb on - strand, within SGL_RS16775at 3223.351 kb on - strand, within SGL_RS16775at 3223.396 kb on - strand, within SGL_RS16775

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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3,220,263 - SGL_RS16765 0.11 -0.7
3,220,308 - SGL_RS16765 0.15 -0.2
3,220,448 + SGL_RS16765 0.30 -1.5
3,220,458 + SGL_RS16765 0.31 +0.1
3,220,464 + SGL_RS16765 0.32 +0.0
3,220,663 + SGL_RS16765 0.53 -0.7
3,221,355 + +0.2
3,221,384 - SGL_RS16770 0.11 -2.9
3,221,521 - SGL_RS16770 0.23 -3.1
3,221,583 - SGL_RS16770 0.28 -3.0
3,222,146 - SGL_RS16770 0.76 -0.2
3,222,184 - SGL_RS16770 0.79 -3.9
3,222,204 - SGL_RS16770 0.81 -0.0
3,222,348 + -2.8
3,222,539 - -2.6
3,222,540 + -2.1
3,222,545 + -4.0
3,222,610 + -5.0
3,222,618 - SGL_RS16775 0.10 -1.9
3,222,618 - SGL_RS16775 0.10 -2.8
3,223,148 + SGL_RS16775 0.48 -0.6
3,223,211 + SGL_RS16775 0.53 -3.1
3,223,211 + SGL_RS16775 0.53 -4.6
3,223,241 + SGL_RS16775 0.55 -3.3
3,223,249 + SGL_RS16775 0.56 -3.1
3,223,257 - SGL_RS16775 0.56 -1.5
3,223,257 - SGL_RS16775 0.56 -4.6
3,223,351 - SGL_RS16775 0.63 -3.0
3,223,396 - SGL_RS16775 0.66 -1.8

Or see this region's nucleotide sequence