Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16665 and SGL_RS16670 are separated by 240 nucleotides SGL_RS16670 and SGL_RS16675 are separated by 106 nucleotides
SGL_RS16665: SGL_RS16665 - transglycosylase SLT domain-containing protein, at 3,194,023 to 3,196,542
_RS16665
SGL_RS16670: SGL_RS16670 - DUF5942 domain-containing protein, at 3,196,783 to 3,198,624
_RS16670
SGL_RS16675: SGL_RS16675 - uroporphyrinogen decarboxylase, at 3,198,731 to 3,199,783
_RS16675
Position (kb)
3196
3197
3198
3199 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3195.861 kb on - strand, within SGL_RS16665 at 3195.879 kb on - strand, within SGL_RS16665 at 3196.123 kb on + strand, within SGL_RS16665 at 3196.211 kb on - strand, within SGL_RS16665 at 3196.272 kb on + strand, within SGL_RS16665 at 3196.558 kb on + strand at 3196.558 kb on + strand at 3197.020 kb on + strand, within SGL_RS16670 at 3197.119 kb on - strand, within SGL_RS16670 at 3197.283 kb on - strand, within SGL_RS16670 at 3197.383 kb on - strand, within SGL_RS16670 at 3197.397 kb on + strand, within SGL_RS16670 at 3197.720 kb on - strand, within SGL_RS16670 at 3197.720 kb on - strand, within SGL_RS16670 at 3197.730 kb on + strand, within SGL_RS16670 at 3197.937 kb on + strand, within SGL_RS16670 at 3197.971 kb on + strand, within SGL_RS16670 at 3197.986 kb on + strand, within SGL_RS16670 at 3198.027 kb on - strand, within SGL_RS16670 at 3198.172 kb on + strand, within SGL_RS16670 at 3198.180 kb on - strand, within SGL_RS16670 at 3198.180 kb on - strand, within SGL_RS16670 at 3198.187 kb on - strand, within SGL_RS16670 at 3198.253 kb on + strand, within SGL_RS16670 at 3198.351 kb on + strand, within SGL_RS16670 at 3198.481 kb on - strand at 3198.582 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 3,195,861 - SGL_RS16665 0.73 -4.5 3,195,879 - SGL_RS16665 0.74 -2.1 3,196,123 + SGL_RS16665 0.83 -4.5 3,196,211 - SGL_RS16665 0.87 -4.9 3,196,272 + SGL_RS16665 0.89 -3.9 3,196,558 + +0.3 3,196,558 + +0.9 3,197,020 + SGL_RS16670 0.13 -4.2 3,197,119 - SGL_RS16670 0.18 -3.8 3,197,283 - SGL_RS16670 0.27 -4.0 3,197,383 - SGL_RS16670 0.33 -3.8 3,197,397 + SGL_RS16670 0.33 -3.5 3,197,720 - SGL_RS16670 0.51 -3.8 3,197,720 - SGL_RS16670 0.51 -4.0 3,197,730 + SGL_RS16670 0.51 -3.2 3,197,937 + SGL_RS16670 0.63 -3.5 3,197,971 + SGL_RS16670 0.64 -5.2 3,197,986 + SGL_RS16670 0.65 -3.9 3,198,027 - SGL_RS16670 0.68 -2.7 3,198,172 + SGL_RS16670 0.75 -1.5 3,198,180 - SGL_RS16670 0.76 -5.9 3,198,180 - SGL_RS16670 0.76 -4.0 3,198,187 - SGL_RS16670 0.76 -4.2 3,198,253 + SGL_RS16670 0.80 -3.6 3,198,351 + SGL_RS16670 0.85 -2.1 3,198,481 - -3.8 3,198,582 - -0.7
Or see this region's nucleotide sequence