Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15825 and SGL_RS15830 are separated by 225 nucleotides SGL_RS15830 and SGL_RS15835 are separated by 332 nucleotides
SGL_RS15825: SGL_RS15825 - phosphomethylpyrimidine synthase, at 2,999,181 to 3,000,560
_RS15825
SGL_RS15830: SGL_RS15830 - YihY/virulence factor BrkB family protein, at 3,000,786 to 3,001,742
_RS15830
SGL_RS15835: SGL_RS15835 - TrmJ/YjtD family RNA methyltransferase, at 3,002,075 to 3,002,797
_RS15835
Position (kb)
3000
3001
3002 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3000.561 kb on + strand at 3000.669 kb on - strand at 3000.733 kb on + strand at 3000.744 kb on + strand at 3000.789 kb on - strand at 3001.930 kb on + strand at 3001.930 kb on + strand at 3002.186 kb on + strand, within SGL_RS15835 at 3002.227 kb on + strand, within SGL_RS15835 at 3002.289 kb on + strand, within SGL_RS15835 at 3002.297 kb on - strand, within SGL_RS15835 at 3002.370 kb on - strand, within SGL_RS15835 at 3002.407 kb on - strand, within SGL_RS15835 at 3002.407 kb on - strand, within SGL_RS15835 at 3002.422 kb on - strand, within SGL_RS15835 at 3002.445 kb on + strand, within SGL_RS15835 at 3002.451 kb on - strand, within SGL_RS15835 at 3002.462 kb on - strand, within SGL_RS15835 at 3002.499 kb on + strand, within SGL_RS15835 at 3002.571 kb on - strand, within SGL_RS15835 at 3002.587 kb on - strand, within SGL_RS15835 at 3002.613 kb on - strand, within SGL_RS15835 at 3002.619 kb on - strand, within SGL_RS15835 at 3002.630 kb on + strand, within SGL_RS15835 at 3002.735 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 3,000,561 + -2.4 3,000,669 - -2.7 3,000,733 + -2.4 3,000,744 + -1.7 3,000,789 - -0.4 3,001,930 + +1.2 3,001,930 + +0.7 3,002,186 + SGL_RS15835 0.15 -2.6 3,002,227 + SGL_RS15835 0.21 -5.6 3,002,289 + SGL_RS15835 0.30 -4.0 3,002,297 - SGL_RS15835 0.31 -1.9 3,002,370 - SGL_RS15835 0.41 -1.0 3,002,407 - SGL_RS15835 0.46 -1.4 3,002,407 - SGL_RS15835 0.46 -3.9 3,002,422 - SGL_RS15835 0.48 -4.2 3,002,445 + SGL_RS15835 0.51 -3.5 3,002,451 - SGL_RS15835 0.52 -4.2 3,002,462 - SGL_RS15835 0.54 -0.4 3,002,499 + SGL_RS15835 0.59 -1.8 3,002,571 - SGL_RS15835 0.69 -3.8 3,002,587 - SGL_RS15835 0.71 -4.6 3,002,613 - SGL_RS15835 0.74 -2.4 3,002,619 - SGL_RS15835 0.75 -4.2 3,002,630 + SGL_RS15835 0.77 -6.1 3,002,735 - -0.8
Or see this region's nucleotide sequence