Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15485 and SGL_RS15490 are separated by 3 nucleotides SGL_RS15490 and SGL_RS15495 are separated by 211 nucleotides SGL_RS15495 and SGL_RS15500 are separated by 172 nucleotides SGL_RS15500 and SGL_RS15505 overlap by 4 nucleotides
SGL_RS15485: SGL_RS15485 - biopolymer transporter ExbD, at 2,923,356 to 2,923,799
_RS15485
SGL_RS15490: SGL_RS15490 - MotA/TolQ/ExbB proton channel family protein, at 2,923,803 to 2,924,567
_RS15490
SGL_RS15495: SGL_RS15495 - Fe(3+) ABC transporter substrate-binding protein, at 2,924,779 to 2,925,819
_RS15495
SGL_RS15500: SGL_RS15500 - hypothetical protein, at 2,925,992 to 2,926,786
_RS15500
SGL_RS15505: SGL_RS15505 - pentapeptide repeat-containing protein, at 2,926,783 to 2,927,283
_RS15505
Position (kb)
2924
2925
2926 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2923.801 kb on + strand at 2923.801 kb on + strand at 2923.824 kb on - strand at 2923.850 kb on + strand at 2923.858 kb on - strand at 2923.936 kb on - strand, within SGL_RS15490 at 2924.237 kb on + strand, within SGL_RS15490 at 2924.237 kb on + strand, within SGL_RS15490 at 2924.332 kb on + strand, within SGL_RS15490 at 2924.397 kb on - strand, within SGL_RS15490 at 2924.408 kb on + strand, within SGL_RS15490 at 2924.460 kb on - strand, within SGL_RS15490 at 2924.488 kb on + strand, within SGL_RS15490 at 2924.509 kb on + strand at 2924.517 kb on - strand at 2924.517 kb on - strand at 2924.657 kb on + strand at 2924.665 kb on - strand at 2924.699 kb on + strand at 2924.730 kb on - strand at 2924.839 kb on + strand at 2924.869 kb on + strand at 2924.877 kb on - strand at 2924.877 kb on - strand at 2924.877 kb on - strand at 2924.947 kb on + strand, within SGL_RS15495 at 2925.003 kb on + strand, within SGL_RS15495 at 2925.040 kb on - strand, within SGL_RS15495 at 2925.056 kb on - strand, within SGL_RS15495 at 2925.203 kb on - strand, within SGL_RS15495 at 2925.207 kb on + strand, within SGL_RS15495 at 2925.234 kb on - strand, within SGL_RS15495 at 2925.272 kb on + strand, within SGL_RS15495 at 2925.352 kb on + strand, within SGL_RS15495 at 2925.359 kb on - strand, within SGL_RS15495 at 2925.580 kb on - strand, within SGL_RS15495 at 2925.580 kb on - strand, within SGL_RS15495 at 2925.659 kb on - strand, within SGL_RS15495 at 2925.689 kb on + strand, within SGL_RS15495 at 2925.762 kb on - strand at 2925.909 kb on - strand at 2926.053 kb on + strand at 2926.084 kb on - strand, within SGL_RS15500 at 2926.248 kb on - strand, within SGL_RS15500 at 2926.248 kb on - strand, within SGL_RS15500 at 2926.248 kb on - strand, within SGL_RS15500 at 2926.343 kb on + strand, within SGL_RS15500 at 2926.351 kb on - strand, within SGL_RS15500 at 2926.429 kb on - strand, within SGL_RS15500 at 2926.489 kb on - strand, within SGL_RS15500 at 2926.510 kb on - strand, within SGL_RS15500 at 2926.544 kb on - strand, within SGL_RS15500 at 2926.544 kb on - strand, within SGL_RS15500 at 2926.571 kb on + strand, within SGL_RS15500 at 2926.600 kb on - strand, within SGL_RS15500 at 2926.623 kb on + strand, within SGL_RS15500
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 2,923,801 + -0.8 2,923,801 + -0.1 2,923,824 - -0.0 2,923,850 + -1.9 2,923,858 - +0.0 2,923,936 - SGL_RS15490 0.17 +3.3 2,924,237 + SGL_RS15490 0.57 -0.8 2,924,237 + SGL_RS15490 0.57 -0.8 2,924,332 + SGL_RS15490 0.69 -1.7 2,924,397 - SGL_RS15490 0.78 +0.3 2,924,408 + SGL_RS15490 0.79 +0.6 2,924,460 - SGL_RS15490 0.86 +2.6 2,924,488 + SGL_RS15490 0.90 +0.1 2,924,509 + +1.2 2,924,517 - -1.1 2,924,517 - -0.6 2,924,657 + -0.9 2,924,665 - +0.9 2,924,699 + -0.6 2,924,730 - +0.3 2,924,839 + -0.1 2,924,869 + +1.7 2,924,877 - +0.9 2,924,877 - -2.0 2,924,877 - +1.3 2,924,947 + SGL_RS15495 0.16 +0.2 2,925,003 + SGL_RS15495 0.22 +0.0 2,925,040 - SGL_RS15495 0.25 -0.9 2,925,056 - SGL_RS15495 0.27 -0.2 2,925,203 - SGL_RS15495 0.41 -0.1 2,925,207 + SGL_RS15495 0.41 -0.0 2,925,234 - SGL_RS15495 0.44 +0.5 2,925,272 + SGL_RS15495 0.47 -2.0 2,925,352 + SGL_RS15495 0.55 -0.6 2,925,359 - SGL_RS15495 0.56 +1.2 2,925,580 - SGL_RS15495 0.77 +1.2 2,925,580 - SGL_RS15495 0.77 +1.2 2,925,659 - SGL_RS15495 0.85 +0.8 2,925,689 + SGL_RS15495 0.87 +1.3 2,925,762 - +1.0 2,925,909 - +0.1 2,926,053 + +0.2 2,926,084 - SGL_RS15500 0.12 -1.1 2,926,248 - SGL_RS15500 0.32 -0.8 2,926,248 - SGL_RS15500 0.32 +0.8 2,926,248 - SGL_RS15500 0.32 -0.8 2,926,343 + SGL_RS15500 0.44 -0.0 2,926,351 - SGL_RS15500 0.45 -0.3 2,926,429 - SGL_RS15500 0.55 +0.7 2,926,489 - SGL_RS15500 0.63 -0.3 2,926,510 - SGL_RS15500 0.65 +0.1 2,926,544 - SGL_RS15500 0.69 +0.5 2,926,544 - SGL_RS15500 0.69 +0.7 2,926,571 + SGL_RS15500 0.73 +0.5 2,926,600 - SGL_RS15500 0.76 +0.6 2,926,623 + SGL_RS15500 0.79 +0.2
Or see this region's nucleotide sequence