Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15495

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15485 and SGL_RS15490 are separated by 3 nucleotidesSGL_RS15490 and SGL_RS15495 are separated by 211 nucleotidesSGL_RS15495 and SGL_RS15500 are separated by 172 nucleotidesSGL_RS15500 and SGL_RS15505 overlap by 4 nucleotides SGL_RS15485: SGL_RS15485 - biopolymer transporter ExbD, at 2,923,356 to 2,923,799 _RS15485 SGL_RS15490: SGL_RS15490 - MotA/TolQ/ExbB proton channel family protein, at 2,923,803 to 2,924,567 _RS15490 SGL_RS15495: SGL_RS15495 - Fe(3+) ABC transporter substrate-binding protein, at 2,924,779 to 2,925,819 _RS15495 SGL_RS15500: SGL_RS15500 - hypothetical protein, at 2,925,992 to 2,926,786 _RS15500 SGL_RS15505: SGL_RS15505 - pentapeptide repeat-containing protein, at 2,926,783 to 2,927,283 _RS15505 Position (kb) 2924 2925 2926Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2923.801 kb on + strandat 2923.801 kb on + strandat 2923.824 kb on - strandat 2923.850 kb on + strandat 2923.858 kb on - strandat 2923.936 kb on - strand, within SGL_RS15490at 2924.237 kb on + strand, within SGL_RS15490at 2924.237 kb on + strand, within SGL_RS15490at 2924.332 kb on + strand, within SGL_RS15490at 2924.397 kb on - strand, within SGL_RS15490at 2924.408 kb on + strand, within SGL_RS15490at 2924.460 kb on - strand, within SGL_RS15490at 2924.488 kb on + strand, within SGL_RS15490at 2924.509 kb on + strandat 2924.517 kb on - strandat 2924.517 kb on - strandat 2924.657 kb on + strandat 2924.665 kb on - strandat 2924.699 kb on + strandat 2924.730 kb on - strandat 2924.839 kb on + strandat 2924.869 kb on + strandat 2924.877 kb on - strandat 2924.877 kb on - strandat 2924.877 kb on - strandat 2924.947 kb on + strand, within SGL_RS15495at 2925.003 kb on + strand, within SGL_RS15495at 2925.040 kb on - strand, within SGL_RS15495at 2925.056 kb on - strand, within SGL_RS15495at 2925.203 kb on - strand, within SGL_RS15495at 2925.207 kb on + strand, within SGL_RS15495at 2925.234 kb on - strand, within SGL_RS15495at 2925.272 kb on + strand, within SGL_RS15495at 2925.352 kb on + strand, within SGL_RS15495at 2925.359 kb on - strand, within SGL_RS15495at 2925.580 kb on - strand, within SGL_RS15495at 2925.580 kb on - strand, within SGL_RS15495at 2925.659 kb on - strand, within SGL_RS15495at 2925.689 kb on + strand, within SGL_RS15495at 2925.762 kb on - strandat 2925.909 kb on - strandat 2926.053 kb on + strandat 2926.084 kb on - strand, within SGL_RS15500at 2926.248 kb on - strand, within SGL_RS15500at 2926.248 kb on - strand, within SGL_RS15500at 2926.248 kb on - strand, within SGL_RS15500at 2926.343 kb on + strand, within SGL_RS15500at 2926.351 kb on - strand, within SGL_RS15500at 2926.429 kb on - strand, within SGL_RS15500at 2926.489 kb on - strand, within SGL_RS15500at 2926.510 kb on - strand, within SGL_RS15500at 2926.544 kb on - strand, within SGL_RS15500at 2926.544 kb on - strand, within SGL_RS15500at 2926.571 kb on + strand, within SGL_RS15500at 2926.600 kb on - strand, within SGL_RS15500at 2926.623 kb on + strand, within SGL_RS15500

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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2,923,801 + -0.8
2,923,801 + -0.1
2,923,824 - -0.0
2,923,850 + -1.9
2,923,858 - +0.0
2,923,936 - SGL_RS15490 0.17 +3.3
2,924,237 + SGL_RS15490 0.57 -0.8
2,924,237 + SGL_RS15490 0.57 -0.8
2,924,332 + SGL_RS15490 0.69 -1.7
2,924,397 - SGL_RS15490 0.78 +0.3
2,924,408 + SGL_RS15490 0.79 +0.6
2,924,460 - SGL_RS15490 0.86 +2.6
2,924,488 + SGL_RS15490 0.90 +0.1
2,924,509 + +1.2
2,924,517 - -1.1
2,924,517 - -0.6
2,924,657 + -0.9
2,924,665 - +0.9
2,924,699 + -0.6
2,924,730 - +0.3
2,924,839 + -0.1
2,924,869 + +1.7
2,924,877 - +0.9
2,924,877 - -2.0
2,924,877 - +1.3
2,924,947 + SGL_RS15495 0.16 +0.2
2,925,003 + SGL_RS15495 0.22 +0.0
2,925,040 - SGL_RS15495 0.25 -0.9
2,925,056 - SGL_RS15495 0.27 -0.2
2,925,203 - SGL_RS15495 0.41 -0.1
2,925,207 + SGL_RS15495 0.41 -0.0
2,925,234 - SGL_RS15495 0.44 +0.5
2,925,272 + SGL_RS15495 0.47 -2.0
2,925,352 + SGL_RS15495 0.55 -0.6
2,925,359 - SGL_RS15495 0.56 +1.2
2,925,580 - SGL_RS15495 0.77 +1.2
2,925,580 - SGL_RS15495 0.77 +1.2
2,925,659 - SGL_RS15495 0.85 +0.8
2,925,689 + SGL_RS15495 0.87 +1.3
2,925,762 - +1.0
2,925,909 - +0.1
2,926,053 + +0.2
2,926,084 - SGL_RS15500 0.12 -1.1
2,926,248 - SGL_RS15500 0.32 -0.8
2,926,248 - SGL_RS15500 0.32 +0.8
2,926,248 - SGL_RS15500 0.32 -0.8
2,926,343 + SGL_RS15500 0.44 -0.0
2,926,351 - SGL_RS15500 0.45 -0.3
2,926,429 - SGL_RS15500 0.55 +0.7
2,926,489 - SGL_RS15500 0.63 -0.3
2,926,510 - SGL_RS15500 0.65 +0.1
2,926,544 - SGL_RS15500 0.69 +0.5
2,926,544 - SGL_RS15500 0.69 +0.7
2,926,571 + SGL_RS15500 0.73 +0.5
2,926,600 - SGL_RS15500 0.76 +0.6
2,926,623 + SGL_RS15500 0.79 +0.2

Or see this region's nucleotide sequence