Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14325

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14320 and SGL_RS14325 are separated by 20 nucleotidesSGL_RS14325 and SGL_RS14330 are separated by 152 nucleotides SGL_RS14320: SGL_RS14320 - site-2 protease family protein, at 2,666,040 to 2,667,521 _RS14320 SGL_RS14325: SGL_RS14325 - ABC transporter substrate-binding protein, at 2,667,542 to 2,668,936 _RS14325 SGL_RS14330: SGL_RS14330 - tRNA dihydrouridine synthase DusB, at 2,669,089 to 2,670,156 _RS14330 Position (kb) 2667 2668 2669Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2666.679 kb on + strand, within SGL_RS14320at 2666.762 kb on + strand, within SGL_RS14320at 2667.022 kb on + strand, within SGL_RS14320at 2667.027 kb on + strand, within SGL_RS14320at 2667.035 kb on - strand, within SGL_RS14320at 2667.035 kb on - strand, within SGL_RS14320at 2667.039 kb on + strand, within SGL_RS14320at 2667.159 kb on + strand, within SGL_RS14320at 2667.167 kb on - strand, within SGL_RS14320at 2667.222 kb on - strand, within SGL_RS14320at 2667.339 kb on - strand, within SGL_RS14320at 2667.453 kb on - strandat 2667.599 kb on - strandat 2667.619 kb on - strandat 2667.713 kb on + strand, within SGL_RS14325at 2667.745 kb on - strand, within SGL_RS14325at 2667.762 kb on - strand, within SGL_RS14325at 2667.774 kb on + strand, within SGL_RS14325at 2667.839 kb on - strand, within SGL_RS14325at 2667.846 kb on - strand, within SGL_RS14325at 2667.870 kb on - strand, within SGL_RS14325at 2667.913 kb on + strand, within SGL_RS14325at 2667.939 kb on - strand, within SGL_RS14325at 2667.939 kb on - strand, within SGL_RS14325at 2667.956 kb on + strand, within SGL_RS14325at 2668.015 kb on - strand, within SGL_RS14325at 2668.184 kb on + strand, within SGL_RS14325at 2668.222 kb on - strand, within SGL_RS14325at 2668.227 kb on + strand, within SGL_RS14325at 2668.234 kb on - strand, within SGL_RS14325at 2668.296 kb on + strand, within SGL_RS14325at 2668.306 kb on + strand, within SGL_RS14325at 2668.306 kb on + strand, within SGL_RS14325at 2668.314 kb on - strand, within SGL_RS14325at 2668.364 kb on - strand, within SGL_RS14325at 2668.372 kb on - strand, within SGL_RS14325at 2668.508 kb on + strand, within SGL_RS14325at 2668.551 kb on + strand, within SGL_RS14325at 2668.578 kb on + strand, within SGL_RS14325at 2668.580 kb on - strand, within SGL_RS14325at 2668.622 kb on + strand, within SGL_RS14325at 2668.647 kb on - strand, within SGL_RS14325at 2668.794 kb on + strand, within SGL_RS14325at 2668.955 kb on + strandat 2669.107 kb on - strandat 2669.296 kb on - strand, within SGL_RS14330at 2669.445 kb on + strand, within SGL_RS14330at 2669.469 kb on + strand, within SGL_RS14330at 2669.469 kb on + strand, within SGL_RS14330at 2669.473 kb on + strand, within SGL_RS14330at 2669.530 kb on - strand, within SGL_RS14330at 2669.709 kb on + strand, within SGL_RS14330at 2669.709 kb on + strand, within SGL_RS14330at 2669.712 kb on - strand, within SGL_RS14330at 2669.851 kb on - strand, within SGL_RS14330

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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2,666,679 + SGL_RS14320 0.43 -0.7
2,666,762 + SGL_RS14320 0.49 +1.6
2,667,022 + SGL_RS14320 0.66 +1.0
2,667,027 + SGL_RS14320 0.67 +1.6
2,667,035 - SGL_RS14320 0.67 +1.5
2,667,035 - SGL_RS14320 0.67 +1.5
2,667,039 + SGL_RS14320 0.67 +0.8
2,667,159 + SGL_RS14320 0.76 +0.4
2,667,167 - SGL_RS14320 0.76 -0.3
2,667,222 - SGL_RS14320 0.80 +1.3
2,667,339 - SGL_RS14320 0.88 +3.0
2,667,453 - +1.6
2,667,599 - -0.0
2,667,619 - -0.0
2,667,713 + SGL_RS14325 0.12 +0.3
2,667,745 - SGL_RS14325 0.15 -0.2
2,667,762 - SGL_RS14325 0.16 -0.6
2,667,774 + SGL_RS14325 0.17 -1.6
2,667,839 - SGL_RS14325 0.21 +2.5
2,667,846 - SGL_RS14325 0.22 -0.5
2,667,870 - SGL_RS14325 0.24 +1.5
2,667,913 + SGL_RS14325 0.27 -0.6
2,667,939 - SGL_RS14325 0.28 -0.6
2,667,939 - SGL_RS14325 0.28 +0.2
2,667,956 + SGL_RS14325 0.30 -1.4
2,668,015 - SGL_RS14325 0.34 +0.4
2,668,184 + SGL_RS14325 0.46 -1.5
2,668,222 - SGL_RS14325 0.49 -0.2
2,668,227 + SGL_RS14325 0.49 +0.2
2,668,234 - SGL_RS14325 0.50 -1.4
2,668,296 + SGL_RS14325 0.54 +1.1
2,668,306 + SGL_RS14325 0.55 -1.4
2,668,306 + SGL_RS14325 0.55 +0.8
2,668,314 - SGL_RS14325 0.55 -0.6
2,668,364 - SGL_RS14325 0.59 -0.9
2,668,372 - SGL_RS14325 0.59 -0.9
2,668,508 + SGL_RS14325 0.69 -2.2
2,668,551 + SGL_RS14325 0.72 -2.8
2,668,578 + SGL_RS14325 0.74 +0.1
2,668,580 - SGL_RS14325 0.74 -0.4
2,668,622 + SGL_RS14325 0.77 -2.5
2,668,647 - SGL_RS14325 0.79 -1.6
2,668,794 + SGL_RS14325 0.90 +0.5
2,668,955 + -0.5
2,669,107 - +0.2
2,669,296 - SGL_RS14330 0.19 -1.0
2,669,445 + SGL_RS14330 0.33 -0.4
2,669,469 + SGL_RS14330 0.36 -1.9
2,669,469 + SGL_RS14330 0.36 -0.1
2,669,473 + SGL_RS14330 0.36 +0.5
2,669,530 - SGL_RS14330 0.41 +0.0
2,669,709 + SGL_RS14330 0.58 -0.1
2,669,709 + SGL_RS14330 0.58 -2.4
2,669,712 - SGL_RS14330 0.58 -1.1
2,669,851 - SGL_RS14330 0.71 +0.0

Or see this region's nucleotide sequence