Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14040

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14030 and SGL_RS14035 are separated by 14 nucleotidesSGL_RS14035 and SGL_RS14040 are separated by 189 nucleotidesSGL_RS14040 and SGL_RS14045 are separated by 191 nucleotidesSGL_RS14045 and SGL_RS14050 are separated by 163 nucleotides SGL_RS14030: SGL_RS14030 - ATP-binding protein, at 2,607,812 to 2,610,058 _RS14030 SGL_RS14035: SGL_RS14035 - response regulator, at 2,610,073 to 2,610,516 _RS14035 SGL_RS14040: SGL_RS14040 - excinuclease ABC subunit UvrB, at 2,610,706 to 2,612,715 _RS14040 SGL_RS14045: SGL_RS14045 - hypothetical protein, at 2,612,907 to 2,613,317 _RS14045 SGL_RS14050: SGL_RS14050 - photosystem II reaction center X protein, at 2,613,481 to 2,613,600 _RS14050 Position (kb) 2610 2611 2612 2613Strain fitness (log2 ratio) -1 0 1at 2609.829 kb on + strand, within SGL_RS14030at 2609.854 kb on - strandat 2610.017 kb on - strandat 2610.150 kb on - strand, within SGL_RS14035at 2610.150 kb on - strand, within SGL_RS14035at 2610.225 kb on + strand, within SGL_RS14035at 2610.360 kb on + strand, within SGL_RS14035at 2611.238 kb on + strand, within SGL_RS14040at 2611.244 kb on - strand, within SGL_RS14040at 2611.328 kb on + strand, within SGL_RS14040at 2611.517 kb on - strand, within SGL_RS14040at 2611.560 kb on - strand, within SGL_RS14040at 2611.683 kb on + strand, within SGL_RS14040at 2612.281 kb on - strand, within SGL_RS14040at 2612.301 kb on + strand, within SGL_RS14040at 2612.309 kb on - strand, within SGL_RS14040at 2612.457 kb on - strand, within SGL_RS14040at 2612.558 kb on + strandat 2612.795 kb on - strandat 2612.940 kb on - strandat 2613.057 kb on - strand, within SGL_RS14045at 2613.069 kb on + strand, within SGL_RS14045at 2613.216 kb on + strand, within SGL_RS14045at 2613.224 kb on - strand, within SGL_RS14045at 2613.224 kb on - strand, within SGL_RS14045at 2613.315 kb on - strandat 2613.688 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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2,609,829 + SGL_RS14030 0.90 +0.5
2,609,854 - +0.1
2,610,017 - +0.4
2,610,150 - SGL_RS14035 0.17 +0.7
2,610,150 - SGL_RS14035 0.17 +1.2
2,610,225 + SGL_RS14035 0.34 -0.1
2,610,360 + SGL_RS14035 0.65 -1.2
2,611,238 + SGL_RS14040 0.26 +0.9
2,611,244 - SGL_RS14040 0.27 +0.2
2,611,328 + SGL_RS14040 0.31 -1.1
2,611,517 - SGL_RS14040 0.40 +0.6
2,611,560 - SGL_RS14040 0.42 +0.5
2,611,683 + SGL_RS14040 0.49 +0.8
2,612,281 - SGL_RS14040 0.78 +0.7
2,612,301 + SGL_RS14040 0.79 -0.2
2,612,309 - SGL_RS14040 0.80 +0.5
2,612,457 - SGL_RS14040 0.87 +1.4
2,612,558 + +0.8
2,612,795 - +0.1
2,612,940 - -0.1
2,613,057 - SGL_RS14045 0.36 -1.0
2,613,069 + SGL_RS14045 0.39 +0.0
2,613,216 + SGL_RS14045 0.75 -0.3
2,613,224 - SGL_RS14045 0.77 +0.7
2,613,224 - SGL_RS14045 0.77 +0.4
2,613,315 - +1.5
2,613,688 - -1.0

Or see this region's nucleotide sequence