Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13820

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13815 and SGL_RS13820 overlap by 19 nucleotidesSGL_RS13820 and SGL_RS13825 are separated by 31 nucleotides SGL_RS13815: SGL_RS13815 - ribonuclease Z, at 2,564,465 to 2,565,445 _RS13815 SGL_RS13820: SGL_RS13820 - helix-turn-helix domain-containing protein, at 2,565,427 to 2,566,110 _RS13820 SGL_RS13825: SGL_RS13825 - glycosyltransferase, at 2,566,142 to 2,567,143 _RS13825 Position (kb) 2565 2566 2567Strain fitness (log2 ratio) -1 0 1at 2565.463 kb on + strandat 2565.539 kb on - strand, within SGL_RS13820at 2565.799 kb on + strand, within SGL_RS13820at 2565.818 kb on + strand, within SGL_RS13820at 2565.827 kb on - strand, within SGL_RS13820at 2565.934 kb on - strand, within SGL_RS13820

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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2,565,463 + +0.7
2,565,539 - SGL_RS13820 0.16 +0.8
2,565,799 + SGL_RS13820 0.54 -1.5
2,565,818 + SGL_RS13820 0.57 -0.2
2,565,827 - SGL_RS13820 0.58 +0.8
2,565,934 - SGL_RS13820 0.74 -1.3

Or see this region's nucleotide sequence