Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS12905 and SGL_RS12910 are separated by 138 nucleotides SGL_RS12910 and SGL_RS12915 are separated by 113 nucleotides
SGL_RS12905: SGL_RS12905 - PAS domain-containing sensor histidine kinase, at 2,370,818 to 2,372,110
_RS12905
SGL_RS12910: SGL_RS12910 - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 2,372,249 to 2,373,229
_RS12910
SGL_RS12915: SGL_RS12915 - circularly permuted type 2 ATP-grasp protein, at 2,373,343 to 2,374,788
_RS12915
Position (kb)
2372
2373
2374 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2371.278 kb on - strand, within SGL_RS12905 at 2371.420 kb on - strand, within SGL_RS12905 at 2371.524 kb on - strand, within SGL_RS12905 at 2371.708 kb on - strand, within SGL_RS12905 at 2371.709 kb on - strand, within SGL_RS12905 at 2371.872 kb on + strand, within SGL_RS12905 at 2372.366 kb on + strand, within SGL_RS12910 at 2373.390 kb on + strand at 2373.426 kb on + strand at 2373.436 kb on + strand at 2373.534 kb on - strand, within SGL_RS12915 at 2373.559 kb on + strand, within SGL_RS12915 at 2373.648 kb on - strand, within SGL_RS12915 at 2373.695 kb on + strand, within SGL_RS12915 at 2373.855 kb on + strand, within SGL_RS12915 at 2373.858 kb on - strand, within SGL_RS12915 at 2373.858 kb on - strand, within SGL_RS12915 at 2373.883 kb on + strand, within SGL_RS12915 at 2373.932 kb on - strand, within SGL_RS12915 at 2373.976 kb on + strand, within SGL_RS12915 at 2374.116 kb on - strand, within SGL_RS12915 at 2374.126 kb on - strand, within SGL_RS12915
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 2,371,278 - SGL_RS12905 0.36 -1.5 2,371,420 - SGL_RS12905 0.47 -1.2 2,371,524 - SGL_RS12905 0.55 -0.6 2,371,708 - SGL_RS12905 0.69 -0.4 2,371,709 - SGL_RS12905 0.69 -1.4 2,371,872 + SGL_RS12905 0.82 -0.1 2,372,366 + SGL_RS12910 0.12 -3.2 2,373,390 + -1.7 2,373,426 + +0.7 2,373,436 + -1.8 2,373,534 - SGL_RS12915 0.13 -1.6 2,373,559 + SGL_RS12915 0.15 -0.1 2,373,648 - SGL_RS12915 0.21 +0.1 2,373,695 + SGL_RS12915 0.24 +0.8 2,373,855 + SGL_RS12915 0.35 +0.8 2,373,858 - SGL_RS12915 0.36 -0.2 2,373,858 - SGL_RS12915 0.36 -0.3 2,373,883 + SGL_RS12915 0.37 +0.3 2,373,932 - SGL_RS12915 0.41 -1.7 2,373,976 + SGL_RS12915 0.44 -1.5 2,374,116 - SGL_RS12915 0.53 -2.7 2,374,126 - SGL_RS12915 0.54 +0.5
Or see this region's nucleotide sequence