Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12750

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12745 and SGL_RS12750 are separated by 168 nucleotidesSGL_RS12750 and SGL_RS12755 are separated by 205 nucleotides SGL_RS12745: SGL_RS12745 - glycine cleavage system aminomethyltransferase GcvT, at 2,311,377 to 2,312,495 _RS12745 SGL_RS12750: SGL_RS12750 - molecular chaperone DnaK, at 2,312,664 to 2,314,574 _RS12750 SGL_RS12755: SGL_RS12755 - IMS domain-containing protein, at 2,314,780 to 2,316,924 _RS12755 Position (kb) 2312 2313 2314 2315Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2311.690 kb on - strand, within SGL_RS12745at 2311.799 kb on - strand, within SGL_RS12745at 2311.810 kb on - strand, within SGL_RS12745at 2311.825 kb on - strand, within SGL_RS12745at 2312.217 kb on + strand, within SGL_RS12745at 2312.224 kb on + strand, within SGL_RS12745at 2312.592 kb on - strandat 2314.843 kb on - strandat 2314.892 kb on + strandat 2314.936 kb on - strandat 2315.091 kb on - strand, within SGL_RS12755at 2315.153 kb on - strand, within SGL_RS12755at 2315.174 kb on + strand, within SGL_RS12755at 2315.258 kb on - strand, within SGL_RS12755at 2315.469 kb on - strand, within SGL_RS12755

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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2,311,690 - SGL_RS12745 0.28 -1.5
2,311,799 - SGL_RS12745 0.38 -1.0
2,311,810 - SGL_RS12745 0.39 -0.6
2,311,825 - SGL_RS12745 0.40 -0.2
2,312,217 + SGL_RS12745 0.75 -0.8
2,312,224 + SGL_RS12745 0.76 -0.2
2,312,592 - +1.2
2,314,843 - -2.0
2,314,892 + -4.6
2,314,936 - -3.7
2,315,091 - SGL_RS12755 0.14 -3.7
2,315,153 - SGL_RS12755 0.17 -0.3
2,315,174 + SGL_RS12755 0.18 -3.5
2,315,258 - SGL_RS12755 0.22 -1.1
2,315,469 - SGL_RS12755 0.32 -1.9

Or see this region's nucleotide sequence