Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12190

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12180 and SGL_RS12185 are separated by 0 nucleotidesSGL_RS12185 and SGL_RS12190 are separated by 247 nucleotidesSGL_RS12190 and SGL_RS12195 are separated by 30 nucleotidesSGL_RS12195 and SGL_RS12200 are separated by 111 nucleotides SGL_RS12180: SGL_RS12180 - type II toxin-antitoxin system HicB family antitoxin, at 2,193,591 to 2,193,812 _RS12180 SGL_RS12185: SGL_RS12185 - type II toxin-antitoxin system HicA family toxin, at 2,193,813 to 2,194,157 _RS12185 SGL_RS12190: SGL_RS12190 - ATP-dependent chaperone ClpB, at 2,194,405 to 2,197,101 _RS12190 SGL_RS12195: SGL_RS12195 - hypothetical protein, at 2,197,132 to 2,197,620 _RS12195 SGL_RS12200: SGL_RS12200 - efflux RND transporter permease subunit, at 2,197,732 to 2,200,959 _RS12200 Position (kb) 2194 2195 2196 2197 2198Strain fitness (log2 ratio) -3 -2 -1 0 1at 2193.657 kb on + strand, within SGL_RS12180at 2197.377 kb on + strand, within SGL_RS12195at 2197.471 kb on + strand, within SGL_RS12195at 2197.536 kb on + strand, within SGL_RS12195at 2197.544 kb on - strand, within SGL_RS12195at 2197.643 kb on - strandat 2197.905 kb on - strandat 2197.998 kb on + strandat 2198.004 kb on - strandat 2198.017 kb on - strandat 2198.070 kb on - strand, within SGL_RS12200

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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2,193,657 + SGL_RS12180 0.30 +1.4
2,197,377 + SGL_RS12195 0.50 -0.5
2,197,471 + SGL_RS12195 0.69 +0.9
2,197,536 + SGL_RS12195 0.83 -1.5
2,197,544 - SGL_RS12195 0.84 +0.1
2,197,643 - -1.4
2,197,905 - -0.8
2,197,998 + -0.3
2,198,004 - -3.7
2,198,017 - -0.3
2,198,070 - SGL_RS12200 0.10 -1.1

Or see this region's nucleotide sequence