Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11765

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11760 and SGL_RS11765 are separated by 80 nucleotidesSGL_RS11765 and SGL_RS11770 are separated by 221 nucleotidesSGL_RS11770 and SGL_RS11775 are separated by 47 nucleotides SGL_RS11760: SGL_RS11760 - radical SAM protein, at 2,090,026 to 2,091,630 _RS11760 SGL_RS11765: SGL_RS11765 - hypothetical protein, at 2,091,711 to 2,092,178 _RS11765 SGL_RS11770: SGL_RS11770 - tRNA-Asn, at 2,092,400 to 2,092,471 _RS11770 SGL_RS11775: SGL_RS11775 - isoaspartyl peptidase/L-asparaginase, at 2,092,519 to 2,093,508 _RS11775 Position (kb) 2091 2092 2093Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2090.715 kb on + strand, within SGL_RS11760at 2090.796 kb on - strand, within SGL_RS11760at 2090.840 kb on - strand, within SGL_RS11760at 2091.494 kb on - strandat 2091.495 kb on - strandat 2091.601 kb on - strandat 2091.621 kb on - strandat 2091.763 kb on + strand, within SGL_RS11765at 2091.818 kb on - strand, within SGL_RS11765at 2091.863 kb on - strand, within SGL_RS11765at 2091.980 kb on + strand, within SGL_RS11765at 2092.005 kb on + strand, within SGL_RS11765at 2092.013 kb on - strand, within SGL_RS11765at 2092.086 kb on + strand, within SGL_RS11765at 2092.263 kb on + strandat 2092.307 kb on + strandat 2092.659 kb on - strand, within SGL_RS11775at 2092.678 kb on + strand, within SGL_RS11775at 2092.790 kb on - strand, within SGL_RS11775at 2092.833 kb on + strand, within SGL_RS11775at 2092.836 kb on - strand, within SGL_RS11775at 2092.903 kb on + strand, within SGL_RS11775at 2092.918 kb on + strand, within SGL_RS11775at 2092.918 kb on + strand, within SGL_RS11775at 2092.923 kb on + strand, within SGL_RS11775

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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2,090,715 + SGL_RS11760 0.43 -0.7
2,090,796 - SGL_RS11760 0.48 -3.5
2,090,840 - SGL_RS11760 0.51 -3.5
2,091,494 - -3.2
2,091,495 - -3.3
2,091,601 - -3.8
2,091,621 - -2.5
2,091,763 + SGL_RS11765 0.11 -2.1
2,091,818 - SGL_RS11765 0.23 -3.3
2,091,863 - SGL_RS11765 0.32 -2.4
2,091,980 + SGL_RS11765 0.57 -3.9
2,092,005 + SGL_RS11765 0.63 -4.2
2,092,013 - SGL_RS11765 0.65 -0.8
2,092,086 + SGL_RS11765 0.80 -1.3
2,092,263 + -2.1
2,092,307 + +1.4
2,092,659 - SGL_RS11775 0.14 +1.3
2,092,678 + SGL_RS11775 0.16 +1.0
2,092,790 - SGL_RS11775 0.27 -0.7
2,092,833 + SGL_RS11775 0.32 +1.5
2,092,836 - SGL_RS11775 0.32 -0.9
2,092,903 + SGL_RS11775 0.39 +1.2
2,092,918 + SGL_RS11775 0.40 +1.3
2,092,918 + SGL_RS11775 0.40 +1.6
2,092,923 + SGL_RS11775 0.41 +1.3

Or see this region's nucleotide sequence