Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11615

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11610 and SGL_RS11615 are separated by 283 nucleotidesSGL_RS11615 and SGL_RS11620 overlap by 15 nucleotidesSGL_RS11620 and SGL_RS11625 are separated by 192 nucleotides SGL_RS11610: SGL_RS11610 - class I SAM-dependent methyltransferase, at 2,061,101 to 2,062,621 _RS11610 SGL_RS11615: SGL_RS11615 - ATP-dependent chaperone ClpB, at 2,062,905 to 2,065,523 _RS11615 SGL_RS11620: SGL_RS11620 - hypothetical protein, at 2,065,509 to 2,065,808 _RS11620 SGL_RS11625: SGL_RS11625 - phosphoribulokinase, at 2,066,001 to 2,066,999 _RS11625 Position (kb) 2062 2063 2064 2065 2066Strain fitness (log2 ratio) -2 -1 0 1 2at 2062.093 kb on - strand, within SGL_RS11610at 2062.553 kb on - strandat 2062.802 kb on - strandat 2063.073 kb on - strandat 2063.099 kb on + strandat 2063.100 kb on + strandat 2063.141 kb on + strandat 2063.347 kb on + strand, within SGL_RS11615at 2063.355 kb on - strand, within SGL_RS11615at 2063.515 kb on - strand, within SGL_RS11615at 2064.680 kb on + strand, within SGL_RS11615at 2064.747 kb on - strand, within SGL_RS11615at 2065.014 kb on + strand, within SGL_RS11615at 2065.169 kb on - strand, within SGL_RS11615at 2065.321 kb on - strandat 2065.582 kb on - strand, within SGL_RS11620at 2065.582 kb on - strand, within SGL_RS11620at 2065.615 kb on - strand, within SGL_RS11620at 2065.939 kb on - strandat 2065.998 kb on + strandat 2065.998 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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2,062,093 - SGL_RS11610 0.65 -1.9
2,062,553 - -1.0
2,062,802 - +0.4
2,063,073 - +1.8
2,063,099 + +0.3
2,063,100 + +0.8
2,063,141 + -1.7
2,063,347 + SGL_RS11615 0.17 +2.1
2,063,355 - SGL_RS11615 0.17 +0.7
2,063,515 - SGL_RS11615 0.23 +2.2
2,064,680 + SGL_RS11615 0.68 +1.5
2,064,747 - SGL_RS11615 0.70 +2.0
2,065,014 + SGL_RS11615 0.81 +1.2
2,065,169 - SGL_RS11615 0.86 +0.4
2,065,321 - +1.9
2,065,582 - SGL_RS11620 0.24 -0.1
2,065,582 - SGL_RS11620 0.24 +0.9
2,065,615 - SGL_RS11620 0.35 -1.7
2,065,939 - +1.3
2,065,998 + +0.7
2,065,998 + +1.1

Or see this region's nucleotide sequence