Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS11470 and SGL_RS11475 are separated by 130 nucleotides SGL_RS11475 and SGL_RS11480 are separated by 59 nucleotides SGL_RS11480 and SGL_RS11485 are separated by 170 nucleotides SGL_RS11485 and SGL_RS11490 are separated by 263 nucleotides
SGL_RS11470: SGL_RS11470 - carotenoid oxygenase family protein, at 2,031,001 to 2,032,473
_RS11470
SGL_RS11475: SGL_RS11475 - ATP-dependent Clp protease adapter ClpS, at 2,032,604 to 2,032,891
_RS11475
SGL_RS11480: SGL_RS11480 - glycosyltransferase, at 2,032,951 to 2,034,123
_RS11480
SGL_RS11485: SGL_RS11485 - inorganic diphosphatase, at 2,034,294 to 2,034,803
_RS11485
SGL_RS11490: SGL_RS11490 - NAD(P)H-quinone oxidoreductase subunit M, at 2,035,067 to 2,035,432
_RS11490
Position (kb)
2032
2033
2034
2035 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2031.983 kb on - strand, within SGL_RS11470 at 2032.042 kb on - strand, within SGL_RS11470 at 2032.118 kb on + strand, within SGL_RS11470 at 2032.268 kb on + strand, within SGL_RS11470 at 2032.293 kb on - strand, within SGL_RS11470 at 2032.338 kb on + strand at 2032.414 kb on - strand at 2032.414 kb on - strand at 2032.435 kb on - strand at 2032.698 kb on - strand, within SGL_RS11475 at 2032.745 kb on + strand, within SGL_RS11475 at 2032.748 kb on - strand, within SGL_RS11475 at 2032.845 kb on - strand, within SGL_RS11475 at 2032.862 kb on - strand, within SGL_RS11475 at 2033.050 kb on - strand at 2033.175 kb on - strand, within SGL_RS11480 at 2033.239 kb on - strand, within SGL_RS11480 at 2033.302 kb on + strand, within SGL_RS11480 at 2033.409 kb on - strand, within SGL_RS11480 at 2033.487 kb on - strand, within SGL_RS11480 at 2033.514 kb on + strand, within SGL_RS11480 at 2033.514 kb on + strand, within SGL_RS11480 at 2033.522 kb on - strand, within SGL_RS11480 at 2033.623 kb on + strand, within SGL_RS11480 at 2033.670 kb on - strand, within SGL_RS11480 at 2033.752 kb on + strand, within SGL_RS11480 at 2033.945 kb on + strand, within SGL_RS11480 at 2034.066 kb on + strand at 2034.089 kb on - strand at 2034.154 kb on + strand at 2034.206 kb on + strand at 2034.216 kb on - strand at 2034.772 kb on + strand at 2034.819 kb on + strand at 2034.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 2,031,983 - SGL_RS11470 0.67 -0.6 2,032,042 - SGL_RS11470 0.71 -1.1 2,032,118 + SGL_RS11470 0.76 -0.5 2,032,268 + SGL_RS11470 0.86 -0.9 2,032,293 - SGL_RS11470 0.88 +0.2 2,032,338 + +0.3 2,032,414 - -0.2 2,032,414 - -0.1 2,032,435 - +0.2 2,032,698 - SGL_RS11475 0.33 +0.5 2,032,745 + SGL_RS11475 0.49 -1.0 2,032,748 - SGL_RS11475 0.50 -1.2 2,032,845 - SGL_RS11475 0.84 +0.7 2,032,862 - SGL_RS11475 0.90 +0.7 2,033,050 - -1.5 2,033,175 - SGL_RS11480 0.19 -1.7 2,033,239 - SGL_RS11480 0.25 -1.8 2,033,302 + SGL_RS11480 0.30 -2.3 2,033,409 - SGL_RS11480 0.39 -0.7 2,033,487 - SGL_RS11480 0.46 -2.3 2,033,514 + SGL_RS11480 0.48 -2.6 2,033,514 + SGL_RS11480 0.48 -0.6 2,033,522 - SGL_RS11480 0.49 -2.0 2,033,623 + SGL_RS11480 0.57 -1.2 2,033,670 - SGL_RS11480 0.61 -2.0 2,033,752 + SGL_RS11480 0.68 -1.7 2,033,945 + SGL_RS11480 0.85 -1.5 2,034,066 + -1.5 2,034,089 - -3.2 2,034,154 + -0.6 2,034,206 + +3.5 2,034,216 - -1.4 2,034,772 + -0.3 2,034,819 + -1.6 2,034,905 - -0.4
Or see this region's nucleotide sequence