Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11480

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11470 and SGL_RS11475 are separated by 130 nucleotidesSGL_RS11475 and SGL_RS11480 are separated by 59 nucleotidesSGL_RS11480 and SGL_RS11485 are separated by 170 nucleotidesSGL_RS11485 and SGL_RS11490 are separated by 263 nucleotides SGL_RS11470: SGL_RS11470 - carotenoid oxygenase family protein, at 2,031,001 to 2,032,473 _RS11470 SGL_RS11475: SGL_RS11475 - ATP-dependent Clp protease adapter ClpS, at 2,032,604 to 2,032,891 _RS11475 SGL_RS11480: SGL_RS11480 - glycosyltransferase, at 2,032,951 to 2,034,123 _RS11480 SGL_RS11485: SGL_RS11485 - inorganic diphosphatase, at 2,034,294 to 2,034,803 _RS11485 SGL_RS11490: SGL_RS11490 - NAD(P)H-quinone oxidoreductase subunit M, at 2,035,067 to 2,035,432 _RS11490 Position (kb) 2032 2033 2034 2035Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2031.983 kb on - strand, within SGL_RS11470at 2032.042 kb on - strand, within SGL_RS11470at 2032.118 kb on + strand, within SGL_RS11470at 2032.268 kb on + strand, within SGL_RS11470at 2032.293 kb on - strand, within SGL_RS11470at 2032.338 kb on + strandat 2032.414 kb on - strandat 2032.414 kb on - strandat 2032.435 kb on - strandat 2032.698 kb on - strand, within SGL_RS11475at 2032.745 kb on + strand, within SGL_RS11475at 2032.748 kb on - strand, within SGL_RS11475at 2032.845 kb on - strand, within SGL_RS11475at 2032.862 kb on - strand, within SGL_RS11475at 2033.050 kb on - strandat 2033.175 kb on - strand, within SGL_RS11480at 2033.239 kb on - strand, within SGL_RS11480at 2033.302 kb on + strand, within SGL_RS11480at 2033.409 kb on - strand, within SGL_RS11480at 2033.487 kb on - strand, within SGL_RS11480at 2033.514 kb on + strand, within SGL_RS11480at 2033.514 kb on + strand, within SGL_RS11480at 2033.522 kb on - strand, within SGL_RS11480at 2033.623 kb on + strand, within SGL_RS11480at 2033.670 kb on - strand, within SGL_RS11480at 2033.752 kb on + strand, within SGL_RS11480at 2033.945 kb on + strand, within SGL_RS11480at 2034.066 kb on + strandat 2034.089 kb on - strandat 2034.154 kb on + strandat 2034.206 kb on + strandat 2034.216 kb on - strandat 2034.772 kb on + strandat 2034.819 kb on + strandat 2034.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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2,031,983 - SGL_RS11470 0.67 -0.6
2,032,042 - SGL_RS11470 0.71 -1.1
2,032,118 + SGL_RS11470 0.76 -0.5
2,032,268 + SGL_RS11470 0.86 -0.9
2,032,293 - SGL_RS11470 0.88 +0.2
2,032,338 + +0.3
2,032,414 - -0.2
2,032,414 - -0.1
2,032,435 - +0.2
2,032,698 - SGL_RS11475 0.33 +0.5
2,032,745 + SGL_RS11475 0.49 -1.0
2,032,748 - SGL_RS11475 0.50 -1.2
2,032,845 - SGL_RS11475 0.84 +0.7
2,032,862 - SGL_RS11475 0.90 +0.7
2,033,050 - -1.5
2,033,175 - SGL_RS11480 0.19 -1.7
2,033,239 - SGL_RS11480 0.25 -1.8
2,033,302 + SGL_RS11480 0.30 -2.3
2,033,409 - SGL_RS11480 0.39 -0.7
2,033,487 - SGL_RS11480 0.46 -2.3
2,033,514 + SGL_RS11480 0.48 -2.6
2,033,514 + SGL_RS11480 0.48 -0.6
2,033,522 - SGL_RS11480 0.49 -2.0
2,033,623 + SGL_RS11480 0.57 -1.2
2,033,670 - SGL_RS11480 0.61 -2.0
2,033,752 + SGL_RS11480 0.68 -1.7
2,033,945 + SGL_RS11480 0.85 -1.5
2,034,066 + -1.5
2,034,089 - -3.2
2,034,154 + -0.6
2,034,206 + +3.5
2,034,216 - -1.4
2,034,772 + -0.3
2,034,819 + -1.6
2,034,905 - -0.4

Or see this region's nucleotide sequence