Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10785 and SGL_RS10790 are separated by 135 nucleotides SGL_RS10790 and SGL_RS10795 overlap by 1 nucleotides SGL_RS10795 and SGL_RS10800 are separated by 131 nucleotides SGL_RS10800 and SGL_RS10805 overlap by 14 nucleotides
SGL_RS10785: SGL_RS10785 - AI-2E family transporter, at 1,887,159 to 1,888,262
_RS10785
SGL_RS10790: SGL_RS10790 - DUF4359 domain-containing protein, at 1,888,398 to 1,888,778
_RS10790
SGL_RS10795: SGL_RS10795 - pentapeptide repeat-containing protein, at 1,888,778 to 1,889,740
_RS10795
SGL_RS10800: SGL_RS10800 - 3-isopropylmalate dehydratase small subunit, at 1,889,872 to 1,890,474
_RS10800
SGL_RS10805: SGL_RS10805 - CTP synthase (glutamine hydrolyzing), at 1,890,461 to 1,892,119
_RS10805
Position (kb) 1888
1889
1890 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1887.816 kb on + strand, within SGL_RS10785 at 1887.816 kb on + strand, within SGL_RS10785 at 1887.824 kb on - strand, within SGL_RS10785 at 1887.873 kb on - strand, within SGL_RS10785 at 1887.922 kb on - strand, within SGL_RS10785 at 1887.934 kb on - strand, within SGL_RS10785 at 1888.081 kb on - strand, within SGL_RS10785 at 1888.654 kb on + strand, within SGL_RS10790 at 1888.693 kb on - strand, within SGL_RS10790 at 1888.728 kb on + strand, within SGL_RS10790 at 1888.781 kb on + strand at 1888.791 kb on - strand at 1888.859 kb on + strand at 1889.432 kb on + strand, within SGL_RS10795 at 1889.432 kb on + strand, within SGL_RS10795 at 1889.440 kb on - strand, within SGL_RS10795 at 1889.779 kb on + strand at 1890.495 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 1,887,816 + SGL_RS10785 0.60 -0.0 1,887,816 + SGL_RS10785 0.60 +0.2 1,887,824 - SGL_RS10785 0.60 +1.2 1,887,873 - SGL_RS10785 0.65 +0.9 1,887,922 - SGL_RS10785 0.69 +1.2 1,887,934 - SGL_RS10785 0.70 -0.5 1,888,081 - SGL_RS10785 0.84 -0.4 1,888,654 + SGL_RS10790 0.67 -4.5 1,888,693 - SGL_RS10790 0.77 -3.3 1,888,728 + SGL_RS10790 0.87 +0.8 1,888,781 + -4.0 1,888,791 - -4.3 1,888,859 + -3.6 1,889,432 + SGL_RS10795 0.68 -3.3 1,889,432 + SGL_RS10795 0.68 -3.7 1,889,440 - SGL_RS10795 0.69 -4.0 1,889,779 + -2.0 1,890,495 - -0.3
Or see this region's nucleotide sequence