Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10480 and SGL_RS10485 are separated by 220 nucleotides SGL_RS10485 and SGL_RS10490 are separated by 131 nucleotides SGL_RS10490 and SGL_RS10495 are separated by 32 nucleotides SGL_RS10495 and SGL_RS18890 are separated by 55 nucleotides SGL_RS18890 and SGL_RS10500 are separated by 9 nucleotides
SGL_RS10480: SGL_RS10480 - metallophosphoesterase family protein, at 1,823,968 to 1,824,732
_RS10480
SGL_RS10485: SGL_RS10485 - ComEA family DNA-binding protein, at 1,824,953 to 1,825,468
_RS10485
SGL_RS10490: SGL_RS10490 - precorrin-8X methylmutase, at 1,825,600 to 1,826,226
_RS10490
SGL_RS10495: SGL_RS10495 - EVE domain-containing protein, at 1,826,259 to 1,826,708
_RS10495
SGL_RS18890: SGL_RS18890 - 50S ribosomal protein L34, at 1,826,764 to 1,826,901
_RS18890
SGL_RS10500: SGL_RS10500 - ribonuclease P protein component, at 1,826,911 to 1,827,285
_RS10500
Position (kb)
1825
1826
1827 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1824.627 kb on + strand, within SGL_RS10480 at 1824.772 kb on + strand at 1824.857 kb on + strand at 1824.868 kb on + strand at 1824.876 kb on - strand at 1824.902 kb on + strand at 1825.418 kb on - strand at 1825.665 kb on + strand, within SGL_RS10490 at 1825.671 kb on - strand, within SGL_RS10490 at 1825.678 kb on - strand, within SGL_RS10490 at 1825.680 kb on + strand, within SGL_RS10490 at 1825.680 kb on + strand, within SGL_RS10490 at 1825.688 kb on - strand, within SGL_RS10490 at 1825.736 kb on - strand, within SGL_RS10490 at 1825.857 kb on + strand, within SGL_RS10490 at 1825.879 kb on + strand, within SGL_RS10490 at 1825.915 kb on + strand, within SGL_RS10490 at 1825.955 kb on - strand, within SGL_RS10490 at 1826.046 kb on - strand, within SGL_RS10490 at 1826.448 kb on - strand, within SGL_RS10495 at 1826.483 kb on + strand, within SGL_RS10495 at 1826.604 kb on + strand, within SGL_RS10495 at 1826.623 kb on + strand, within SGL_RS10495 at 1826.768 kb on - strand at 1826.927 kb on - strand at 1827.028 kb on + strand, within SGL_RS10500
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 1,824,627 + SGL_RS10480 0.86 -5.0 1,824,772 + -3.5 1,824,857 + -0.7 1,824,868 + -0.2 1,824,876 - -1.1 1,824,902 + -0.4 1,825,418 - -0.8 1,825,665 + SGL_RS10490 0.10 +1.5 1,825,671 - SGL_RS10490 0.11 +1.0 1,825,678 - SGL_RS10490 0.12 +2.5 1,825,680 + SGL_RS10490 0.13 +1.3 1,825,680 + SGL_RS10490 0.13 +0.4 1,825,688 - SGL_RS10490 0.14 -1.4 1,825,736 - SGL_RS10490 0.22 +1.7 1,825,857 + SGL_RS10490 0.41 +0.3 1,825,879 + SGL_RS10490 0.44 +1.0 1,825,915 + SGL_RS10490 0.50 +0.4 1,825,955 - SGL_RS10490 0.57 -0.4 1,826,046 - SGL_RS10490 0.71 +1.7 1,826,448 - SGL_RS10495 0.42 +1.5 1,826,483 + SGL_RS10495 0.50 -0.0 1,826,604 + SGL_RS10495 0.77 +0.4 1,826,623 + SGL_RS10495 0.81 -1.8 1,826,768 - +0.2 1,826,927 - +1.6 1,827,028 + SGL_RS10500 0.31 +0.5
Or see this region's nucleotide sequence