Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10355

Experiment: medium light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS10350 and SGL_RS10355 are separated by 85 nucleotidesSGL_RS10355 and SGL_RS10360 are separated by 145 nucleotidesSGL_RS10360 and SGL_RS10365 are separated by 69 nucleotides SGL_RS10350: SGL_RS10350 - DUF3685 domain-containing protein, at 1,795,778 to 1,797,466 _RS10350 SGL_RS10355: SGL_RS10355 - ABC transporter ATP-binding protein, at 1,797,552 to 1,798,658 _RS10355 SGL_RS10360: SGL_RS10360 - hypothetical protein, at 1,798,804 to 1,799,538 _RS10360 SGL_RS10365: SGL_RS10365 - CbiQ family ECF transporter T component, at 1,799,608 to 1,800,483 _RS10365 Position (kb) 1797 1798 1799Strain fitness (log2 ratio) -3 -2 -1 0 1at 1797.574 kb on + strandat 1797.582 kb on - strandat 1797.582 kb on - strandat 1797.598 kb on - strandat 1798.834 kb on + strandat 1798.861 kb on - strandat 1798.901 kb on - strand, within SGL_RS10360at 1798.969 kb on + strand, within SGL_RS10360at 1799.061 kb on + strand, within SGL_RS10360at 1799.074 kb on - strand, within SGL_RS10360at 1799.351 kb on - strand, within SGL_RS10360at 1799.423 kb on - strand, within SGL_RS10360at 1799.476 kb on + strandat 1799.481 kb on + strandat 1799.491 kb on - strandat 1799.613 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
remove
1,797,574 + -0.3
1,797,582 - -1.5
1,797,582 - -2.2
1,797,598 - -2.5
1,798,834 + -0.9
1,798,861 - -0.8
1,798,901 - SGL_RS10360 0.13 -0.8
1,798,969 + SGL_RS10360 0.22 +1.2
1,799,061 + SGL_RS10360 0.35 -0.4
1,799,074 - SGL_RS10360 0.37 -1.9
1,799,351 - SGL_RS10360 0.74 -0.4
1,799,423 - SGL_RS10360 0.84 -1.6
1,799,476 + -3.0
1,799,481 + -2.5
1,799,491 - -0.6
1,799,613 - -3.1

Or see this region's nucleotide sequence