Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09515 and SGL_RS09520 are separated by 13 nucleotides SGL_RS09520 and SGL_RS09525 overlap by 11 nucleotides SGL_RS09525 and SGL_RS09530 are separated by 30 nucleotides SGL_RS09530 and SGL_RS09535 are separated by 7 nucleotides SGL_RS09535 and SGL_RS09540 are separated by 47 nucleotides
SGL_RS09515: SGL_RS09515 - glycosyltransferase family 2 protein, at 1,629,604 to 1,630,434
_RS09515
SGL_RS09520: SGL_RS09520 - DUF115 domain-containing protein, at 1,630,448 to 1,631,005
_RS09520
SGL_RS09525: SGL_RS09525 - hypothetical protein, at 1,630,995 to 1,631,240
_RS09525
SGL_RS09530: SGL_RS09530 - glycosyltransferase, at 1,631,271 to 1,632,530
_RS09530
SGL_RS09535: SGL_RS09535 - FkbM family methyltransferase, at 1,632,538 to 1,633,374
_RS09535
SGL_RS09540: SGL_RS09540 - glycosyltransferase, at 1,633,422 to 1,634,414
_RS09540
Position (kb) 1631
1632
1633 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 1630.927 kb on + strand, within SGL_RS09520 at 1630.934 kb on - strand, within SGL_RS09520 at 1631.764 kb on + strand, within SGL_RS09530 at 1631.964 kb on + strand, within SGL_RS09530 at 1632.596 kb on + strand at 1632.611 kb on + strand at 1632.630 kb on - strand, within SGL_RS09535 at 1632.760 kb on - strand, within SGL_RS09535 at 1632.780 kb on + strand, within SGL_RS09535 at 1632.791 kb on + strand, within SGL_RS09535 at 1632.823 kb on - strand, within SGL_RS09535 at 1632.967 kb on - strand, within SGL_RS09535 at 1633.059 kb on + strand, within SGL_RS09535 at 1633.067 kb on - strand, within SGL_RS09535 at 1633.069 kb on - strand, within SGL_RS09535 at 1633.137 kb on - strand, within SGL_RS09535 at 1633.165 kb on - strand, within SGL_RS09535 at 1633.182 kb on - strand, within SGL_RS09535 at 1633.201 kb on + strand, within SGL_RS09535 at 1633.476 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 1,630,927 + SGL_RS09520 0.86 -0.9 1,630,934 - SGL_RS09520 0.87 +1.1 1,631,764 + SGL_RS09530 0.39 -5.5 1,631,964 + SGL_RS09530 0.55 -5.9 1,632,596 + -0.6 1,632,611 + -1.6 1,632,630 - SGL_RS09535 0.11 -0.3 1,632,760 - SGL_RS09535 0.27 -1.3 1,632,780 + SGL_RS09535 0.29 -2.2 1,632,791 + SGL_RS09535 0.30 -3.3 1,632,823 - SGL_RS09535 0.34 -1.8 1,632,967 - SGL_RS09535 0.51 -2.7 1,633,059 + SGL_RS09535 0.62 -1.8 1,633,067 - SGL_RS09535 0.63 +0.1 1,633,069 - SGL_RS09535 0.63 -0.8 1,633,137 - SGL_RS09535 0.72 +0.3 1,633,165 - SGL_RS09535 0.75 -2.0 1,633,182 - SGL_RS09535 0.77 -2.1 1,633,201 + SGL_RS09535 0.79 -1.7 1,633,476 + -1.8
Or see this region's nucleotide sequence