Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09170

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09160 and SGL_RS09165 are separated by 110 nucleotidesSGL_RS09165 and SGL_RS09170 are separated by 236 nucleotidesSGL_RS09170 and SGL_RS18835 are separated by 268 nucleotides SGL_RS09160: SGL_RS09160 - thioredoxin family protein, at 1,559,069 to 1,559,611 _RS09160 SGL_RS09165: SGL_RS09165 - hypothetical protein, at 1,559,722 to 1,560,150 _RS09165 SGL_RS09170: SGL_RS09170 - class II fructose-bisphosphatase, at 1,560,387 to 1,561,424 _RS09170 SGL_RS18835: SGL_RS18835 - IS1 family transposase, at 1,561,693 to 1,562,423 _RS18835 Position (kb) 1560 1561 1562Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1559.393 kb on + strand, within SGL_RS09160at 1559.776 kb on - strand, within SGL_RS09165at 1559.907 kb on - strand, within SGL_RS09165at 1559.947 kb on + strand, within SGL_RS09165at 1559.955 kb on - strand, within SGL_RS09165at 1560.019 kb on - strand, within SGL_RS09165at 1560.050 kb on + strand, within SGL_RS09165at 1560.058 kb on - strand, within SGL_RS09165at 1560.123 kb on + strandat 1560.230 kb on - strandat 1560.292 kb on + strandat 1560.293 kb on - strandat 1560.293 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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1,559,393 + SGL_RS09160 0.60 -1.1
1,559,776 - SGL_RS09165 0.13 -0.7
1,559,907 - SGL_RS09165 0.43 -2.7
1,559,947 + SGL_RS09165 0.52 -0.0
1,559,955 - SGL_RS09165 0.54 -3.1
1,560,019 - SGL_RS09165 0.69 -1.5
1,560,050 + SGL_RS09165 0.76 -0.9
1,560,058 - SGL_RS09165 0.78 +2.0
1,560,123 + -1.7
1,560,230 - -0.2
1,560,292 + -0.3
1,560,293 - +0.1
1,560,293 - -0.2

Or see this region's nucleotide sequence