Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09045

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09040 and SGL_RS09045 overlap by 1 nucleotidesSGL_RS09045 and SGL_RS09050 are separated by 74 nucleotidesSGL_RS09050 and SGL_RS09055 are separated by 232 nucleotides SGL_RS09040: SGL_RS09040 - iron ABC transporter permease, at 1,532,944 to 1,534,548 _RS09040 SGL_RS09045: SGL_RS09045 - extracellular solute-binding protein, at 1,534,548 to 1,535,579 _RS09045 SGL_RS09050: SGL_RS09050 - ribosomal protein L7/L12, at 1,535,654 to 1,535,884 _RS09050 SGL_RS09055: SGL_RS09055 - M14 family metallopeptidase, at 1,536,117 to 1,537,793 _RS09055 Position (kb) 1534 1535 1536Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1533.556 kb on + strand, within SGL_RS09040at 1533.613 kb on + strand, within SGL_RS09040at 1533.675 kb on + strand, within SGL_RS09040at 1533.675 kb on + strand, within SGL_RS09040at 1533.676 kb on + strand, within SGL_RS09040at 1533.683 kb on - strand, within SGL_RS09040at 1533.683 kb on - strand, within SGL_RS09040at 1533.683 kb on - strand, within SGL_RS09040at 1533.683 kb on - strand, within SGL_RS09040at 1533.703 kb on + strand, within SGL_RS09040at 1533.833 kb on - strand, within SGL_RS09040at 1533.957 kb on + strand, within SGL_RS09040at 1533.994 kb on - strand, within SGL_RS09040at 1534.044 kb on + strand, within SGL_RS09040at 1534.054 kb on + strand, within SGL_RS09040at 1534.057 kb on + strand, within SGL_RS09040at 1534.065 kb on - strand, within SGL_RS09040at 1534.161 kb on + strand, within SGL_RS09040at 1534.189 kb on + strand, within SGL_RS09040at 1534.201 kb on + strand, within SGL_RS09040at 1534.206 kb on + strand, within SGL_RS09040at 1534.206 kb on + strand, within SGL_RS09040at 1534.214 kb on - strand, within SGL_RS09040at 1534.252 kb on + strand, within SGL_RS09040at 1534.295 kb on - strand, within SGL_RS09040at 1534.396 kb on + strandat 1534.420 kb on - strandat 1534.482 kb on - strandat 1534.546 kb on + strandat 1534.593 kb on - strandat 1534.688 kb on - strand, within SGL_RS09045at 1534.688 kb on - strand, within SGL_RS09045at 1534.692 kb on - strand, within SGL_RS09045at 1534.693 kb on + strand, within SGL_RS09045at 1534.749 kb on + strand, within SGL_RS09045at 1534.759 kb on + strand, within SGL_RS09045at 1534.767 kb on - strand, within SGL_RS09045at 1534.823 kb on + strand, within SGL_RS09045at 1534.864 kb on + strand, within SGL_RS09045at 1534.864 kb on + strand, within SGL_RS09045at 1534.872 kb on - strand, within SGL_RS09045at 1534.872 kb on - strand, within SGL_RS09045at 1535.005 kb on + strand, within SGL_RS09045at 1535.024 kb on + strand, within SGL_RS09045at 1535.031 kb on - strand, within SGL_RS09045at 1535.108 kb on - strand, within SGL_RS09045at 1535.158 kb on + strand, within SGL_RS09045at 1535.158 kb on + strand, within SGL_RS09045at 1535.285 kb on + strand, within SGL_RS09045at 1535.408 kb on + strand, within SGL_RS09045at 1535.626 kb on + strandat 1536.143 kb on - strandat 1536.282 kb on + strandat 1536.362 kb on - strand, within SGL_RS09055at 1536.512 kb on - strand, within SGL_RS09055at 1536.512 kb on - strand, within SGL_RS09055

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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1,533,556 + SGL_RS09040 0.38 -0.3
1,533,613 + SGL_RS09040 0.42 -0.7
1,533,675 + SGL_RS09040 0.46 -0.1
1,533,675 + SGL_RS09040 0.46 -2.1
1,533,676 + SGL_RS09040 0.46 +0.1
1,533,683 - SGL_RS09040 0.46 +0.1
1,533,683 - SGL_RS09040 0.46 -1.1
1,533,683 - SGL_RS09040 0.46 -2.8
1,533,683 - SGL_RS09040 0.46 -2.9
1,533,703 + SGL_RS09040 0.47 -0.1
1,533,833 - SGL_RS09040 0.55 -0.4
1,533,957 + SGL_RS09040 0.63 -0.5
1,533,994 - SGL_RS09040 0.65 -0.5
1,534,044 + SGL_RS09040 0.69 -2.3
1,534,054 + SGL_RS09040 0.69 -0.8
1,534,057 + SGL_RS09040 0.69 -1.6
1,534,065 - SGL_RS09040 0.70 -0.6
1,534,161 + SGL_RS09040 0.76 +0.3
1,534,189 + SGL_RS09040 0.78 +0.3
1,534,201 + SGL_RS09040 0.78 +6.4
1,534,206 + SGL_RS09040 0.79 +0.6
1,534,206 + SGL_RS09040 0.79 -1.1
1,534,214 - SGL_RS09040 0.79 +0.2
1,534,252 + SGL_RS09040 0.81 -2.3
1,534,295 - SGL_RS09040 0.84 +1.0
1,534,396 + -0.8
1,534,420 - -0.7
1,534,482 - -1.6
1,534,546 + -1.0
1,534,593 - +0.4
1,534,688 - SGL_RS09045 0.14 -0.0
1,534,688 - SGL_RS09045 0.14 -0.1
1,534,692 - SGL_RS09045 0.14 -2.0
1,534,693 + SGL_RS09045 0.14 +0.0
1,534,749 + SGL_RS09045 0.19 -0.1
1,534,759 + SGL_RS09045 0.20 -0.5
1,534,767 - SGL_RS09045 0.21 -1.6
1,534,823 + SGL_RS09045 0.27 -0.2
1,534,864 + SGL_RS09045 0.31 -0.1
1,534,864 + SGL_RS09045 0.31 +0.7
1,534,872 - SGL_RS09045 0.31 +0.5
1,534,872 - SGL_RS09045 0.31 -0.3
1,535,005 + SGL_RS09045 0.44 -0.2
1,535,024 + SGL_RS09045 0.46 -2.5
1,535,031 - SGL_RS09045 0.47 -0.2
1,535,108 - SGL_RS09045 0.54 -2.1
1,535,158 + SGL_RS09045 0.59 -0.7
1,535,158 + SGL_RS09045 0.59 -1.3
1,535,285 + SGL_RS09045 0.71 +0.1
1,535,408 + SGL_RS09045 0.83 +0.5
1,535,626 + +0.6
1,536,143 - -0.1
1,536,282 + +0.3
1,536,362 - SGL_RS09055 0.15 +0.6
1,536,512 - SGL_RS09055 0.24 +0.7
1,536,512 - SGL_RS09055 0.24 -0.2

Or see this region's nucleotide sequence