Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08965

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08960 and SGL_RS19340 are separated by 58 nucleotidesSGL_RS19340 and SGL_RS08965 are separated by 166 nucleotidesSGL_RS08965 and SGL_RS08970 are separated by 509 nucleotides SGL_RS08960: SGL_RS08960 - flavodoxin FldA, at 1,516,659 to 1,517,171 _RS08960 SGL_RS19340: SGL_RS19340 - hypothetical protein, at 1,517,230 to 1,517,409 _RS19340 SGL_RS08965: SGL_RS08965 - chlorophyll a/b binding light-harvesting protein, at 1,517,576 to 1,518,604 _RS08965 SGL_RS08970: SGL_RS08970 - ribosome biogenesis GTPase YlqF, at 1,519,114 to 1,519,953 _RS08970 Position (kb) 1517 1518 1519Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7at 1517.234 kb on + strandat 1517.427 kb on - strandat 1517.828 kb on + strand, within SGL_RS08965at 1517.895 kb on + strand, within SGL_RS08965at 1517.921 kb on + strand, within SGL_RS08965at 1517.921 kb on + strand, within SGL_RS08965at 1518.093 kb on + strand, within SGL_RS08965at 1518.112 kb on - strand, within SGL_RS08965at 1518.237 kb on + strand, within SGL_RS08965at 1518.301 kb on - strand, within SGL_RS08965at 1518.324 kb on - strand, within SGL_RS08965at 1518.342 kb on + strand, within SGL_RS08965at 1518.380 kb on - strand, within SGL_RS08965at 1518.384 kb on - strand, within SGL_RS08965at 1518.426 kb on + strand, within SGL_RS08965at 1518.426 kb on + strand, within SGL_RS08965at 1518.434 kb on - strand, within SGL_RS08965at 1518.434 kb on - strand, within SGL_RS08965at 1518.434 kb on - strand, within SGL_RS08965at 1518.466 kb on + strand, within SGL_RS08965at 1518.474 kb on - strand, within SGL_RS08965at 1518.528 kb on + strandat 1518.747 kb on - strandat 1518.889 kb on + strandat 1518.900 kb on + strandat 1518.908 kb on - strandat 1518.913 kb on - strandat 1519.049 kb on + strandat 1519.064 kb on - strandat 1519.087 kb on - strandat 1519.118 kb on - strandat 1519.118 kb on - strandat 1519.370 kb on - strand, within SGL_RS08970at 1519.549 kb on + strand, within SGL_RS08970at 1519.551 kb on + strand, within SGL_RS08970

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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1,517,234 + +0.9
1,517,427 - +0.0
1,517,828 + SGL_RS08965 0.24 -0.5
1,517,895 + SGL_RS08965 0.31 -1.4
1,517,921 + SGL_RS08965 0.34 +1.2
1,517,921 + SGL_RS08965 0.34 -2.9
1,518,093 + SGL_RS08965 0.50 -0.7
1,518,112 - SGL_RS08965 0.52 -2.9
1,518,237 + SGL_RS08965 0.64 -2.3
1,518,301 - SGL_RS08965 0.70 -2.1
1,518,324 - SGL_RS08965 0.73 -3.5
1,518,342 + SGL_RS08965 0.74 -3.6
1,518,380 - SGL_RS08965 0.78 -0.6
1,518,384 - SGL_RS08965 0.79 -1.9
1,518,426 + SGL_RS08965 0.83 -0.1
1,518,426 + SGL_RS08965 0.83 -1.9
1,518,434 - SGL_RS08965 0.83 -3.3
1,518,434 - SGL_RS08965 0.83 -1.0
1,518,434 - SGL_RS08965 0.83 -3.9
1,518,466 + SGL_RS08965 0.86 -2.2
1,518,474 - SGL_RS08965 0.87 -3.5
1,518,528 + -1.9
1,518,747 - -2.9
1,518,889 + -1.1
1,518,900 + -0.9
1,518,908 - -2.1
1,518,913 - +1.4
1,519,049 + +2.8
1,519,064 - +6.0
1,519,087 - +7.0
1,519,118 - -3.2
1,519,118 - -0.5
1,519,370 - SGL_RS08970 0.30 +0.2
1,519,549 + SGL_RS08970 0.52 -0.6
1,519,551 + SGL_RS08970 0.52 +0.0

Or see this region's nucleotide sequence