Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08960 and SGL_RS19340 are separated by 58 nucleotides SGL_RS19340 and SGL_RS08965 are separated by 166 nucleotides SGL_RS08965 and SGL_RS08970 are separated by 509 nucleotides
SGL_RS08960: SGL_RS08960 - flavodoxin FldA, at 1,516,659 to 1,517,171
_RS08960
SGL_RS19340: SGL_RS19340 - hypothetical protein, at 1,517,230 to 1,517,409
_RS19340
SGL_RS08965: SGL_RS08965 - chlorophyll a/b binding light-harvesting protein, at 1,517,576 to 1,518,604
_RS08965
SGL_RS08970: SGL_RS08970 - ribosome biogenesis GTPase YlqF, at 1,519,114 to 1,519,953
_RS08970
Position (kb)
1517
1518
1519 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6
7 at 1517.234 kb on + strand at 1517.427 kb on - strand at 1517.828 kb on + strand, within SGL_RS08965 at 1517.895 kb on + strand, within SGL_RS08965 at 1517.921 kb on + strand, within SGL_RS08965 at 1517.921 kb on + strand, within SGL_RS08965 at 1518.093 kb on + strand, within SGL_RS08965 at 1518.112 kb on - strand, within SGL_RS08965 at 1518.237 kb on + strand, within SGL_RS08965 at 1518.301 kb on - strand, within SGL_RS08965 at 1518.324 kb on - strand, within SGL_RS08965 at 1518.342 kb on + strand, within SGL_RS08965 at 1518.380 kb on - strand, within SGL_RS08965 at 1518.384 kb on - strand, within SGL_RS08965 at 1518.426 kb on + strand, within SGL_RS08965 at 1518.426 kb on + strand, within SGL_RS08965 at 1518.434 kb on - strand, within SGL_RS08965 at 1518.434 kb on - strand, within SGL_RS08965 at 1518.434 kb on - strand, within SGL_RS08965 at 1518.466 kb on + strand, within SGL_RS08965 at 1518.474 kb on - strand, within SGL_RS08965 at 1518.528 kb on + strand at 1518.747 kb on - strand at 1518.889 kb on + strand at 1518.900 kb on + strand at 1518.908 kb on - strand at 1518.913 kb on - strand at 1519.049 kb on + strand at 1519.064 kb on - strand at 1519.087 kb on - strand at 1519.118 kb on - strand at 1519.118 kb on - strand at 1519.370 kb on - strand, within SGL_RS08970 at 1519.549 kb on + strand, within SGL_RS08970 at 1519.551 kb on + strand, within SGL_RS08970
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 1,517,234 + +0.9 1,517,427 - +0.0 1,517,828 + SGL_RS08965 0.24 -0.5 1,517,895 + SGL_RS08965 0.31 -1.4 1,517,921 + SGL_RS08965 0.34 +1.2 1,517,921 + SGL_RS08965 0.34 -2.9 1,518,093 + SGL_RS08965 0.50 -0.7 1,518,112 - SGL_RS08965 0.52 -2.9 1,518,237 + SGL_RS08965 0.64 -2.3 1,518,301 - SGL_RS08965 0.70 -2.1 1,518,324 - SGL_RS08965 0.73 -3.5 1,518,342 + SGL_RS08965 0.74 -3.6 1,518,380 - SGL_RS08965 0.78 -0.6 1,518,384 - SGL_RS08965 0.79 -1.9 1,518,426 + SGL_RS08965 0.83 -0.1 1,518,426 + SGL_RS08965 0.83 -1.9 1,518,434 - SGL_RS08965 0.83 -3.3 1,518,434 - SGL_RS08965 0.83 -1.0 1,518,434 - SGL_RS08965 0.83 -3.9 1,518,466 + SGL_RS08965 0.86 -2.2 1,518,474 - SGL_RS08965 0.87 -3.5 1,518,528 + -1.9 1,518,747 - -2.9 1,518,889 + -1.1 1,518,900 + -0.9 1,518,908 - -2.1 1,518,913 - +1.4 1,519,049 + +2.8 1,519,064 - +6.0 1,519,087 - +7.0 1,519,118 - -3.2 1,519,118 - -0.5 1,519,370 - SGL_RS08970 0.30 +0.2 1,519,549 + SGL_RS08970 0.52 -0.6 1,519,551 + SGL_RS08970 0.52 +0.0
Or see this region's nucleotide sequence