Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08245 and SGL_RS08250 are separated by 8 nucleotides SGL_RS08250 and SGL_RS08255 are separated by 121 nucleotides
SGL_RS08245: SGL_RS08245 - hypothetical protein, at 1,357,740 to 1,358,837
_RS08245
SGL_RS08250: SGL_RS08250 - glycoside hydrolase family 13 protein, at 1,358,846 to 1,360,312
_RS08250
SGL_RS08255: SGL_RS08255 - ABC-F family ATP-binding cassette domain-containing protein, at 1,360,434 to 1,362,158
_RS08255
Position (kb)
1358
1359
1360
1361 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1357.913 kb on - strand, within SGL_RS08245 at 1358.036 kb on + strand, within SGL_RS08245 at 1358.212 kb on + strand, within SGL_RS08245 at 1358.386 kb on + strand, within SGL_RS08245 at 1358.396 kb on + strand, within SGL_RS08245 at 1358.781 kb on - strand at 1359.071 kb on + strand, within SGL_RS08250 at 1359.079 kb on - strand, within SGL_RS08250 at 1359.139 kb on - strand, within SGL_RS08250 at 1359.165 kb on - strand, within SGL_RS08250 at 1359.218 kb on + strand, within SGL_RS08250 at 1359.282 kb on - strand, within SGL_RS08250 at 1359.306 kb on - strand, within SGL_RS08250 at 1359.424 kb on + strand, within SGL_RS08250 at 1359.450 kb on + strand, within SGL_RS08250 at 1359.606 kb on + strand, within SGL_RS08250 at 1359.626 kb on - strand, within SGL_RS08250 at 1359.715 kb on - strand, within SGL_RS08250 at 1359.717 kb on + strand, within SGL_RS08250 at 1359.720 kb on - strand, within SGL_RS08250 at 1359.801 kb on - strand, within SGL_RS08250 at 1359.846 kb on + strand, within SGL_RS08250 at 1359.958 kb on - strand, within SGL_RS08250 at 1359.960 kb on + strand, within SGL_RS08250 at 1360.026 kb on - strand, within SGL_RS08250 at 1360.029 kb on - strand, within SGL_RS08250 at 1360.050 kb on - strand, within SGL_RS08250 at 1360.170 kb on - strand at 1360.172 kb on - strand at 1360.198 kb on + strand at 1360.229 kb on + strand at 1360.232 kb on - strand at 1360.234 kb on + strand at 1360.423 kb on + strand at 1360.431 kb on + strand at 1360.431 kb on - strand at 1360.431 kb on - strand at 1360.527 kb on - strand at 1360.532 kb on - strand at 1360.584 kb on + strand at 1360.648 kb on + strand, within SGL_RS08255 at 1360.703 kb on - strand, within SGL_RS08255 at 1360.829 kb on - strand, within SGL_RS08255 at 1361.048 kb on + strand, within SGL_RS08255 at 1361.279 kb on + strand, within SGL_RS08255
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 1,357,913 - SGL_RS08245 0.16 -2.1 1,358,036 + SGL_RS08245 0.27 -0.1 1,358,212 + SGL_RS08245 0.43 -0.2 1,358,386 + SGL_RS08245 0.59 +0.0 1,358,396 + SGL_RS08245 0.60 -0.2 1,358,781 - -0.2 1,359,071 + SGL_RS08250 0.15 +0.2 1,359,079 - SGL_RS08250 0.16 +0.3 1,359,139 - SGL_RS08250 0.20 -1.4 1,359,165 - SGL_RS08250 0.22 +0.5 1,359,218 + SGL_RS08250 0.25 -1.4 1,359,282 - SGL_RS08250 0.30 -0.5 1,359,306 - SGL_RS08250 0.31 -0.3 1,359,424 + SGL_RS08250 0.39 +0.2 1,359,450 + SGL_RS08250 0.41 -1.1 1,359,606 + SGL_RS08250 0.52 -1.4 1,359,626 - SGL_RS08250 0.53 -0.4 1,359,715 - SGL_RS08250 0.59 +0.6 1,359,717 + SGL_RS08250 0.59 +1.4 1,359,720 - SGL_RS08250 0.60 +0.2 1,359,801 - SGL_RS08250 0.65 -3.7 1,359,846 + SGL_RS08250 0.68 -0.6 1,359,958 - SGL_RS08250 0.76 -0.9 1,359,960 + SGL_RS08250 0.76 -3.3 1,360,026 - SGL_RS08250 0.80 -0.0 1,360,029 - SGL_RS08250 0.81 +0.1 1,360,050 - SGL_RS08250 0.82 -0.7 1,360,170 - +0.0 1,360,172 - -0.3 1,360,198 + +4.2 1,360,229 + +0.2 1,360,232 - +1.6 1,360,234 + +0.7 1,360,423 + +1.6 1,360,431 + +1.8 1,360,431 - +1.3 1,360,431 - +1.2 1,360,527 - +1.7 1,360,532 - -0.2 1,360,584 + +1.0 1,360,648 + SGL_RS08255 0.12 -0.2 1,360,703 - SGL_RS08255 0.16 +1.9 1,360,829 - SGL_RS08255 0.23 +1.1 1,361,048 + SGL_RS08255 0.36 +1.3 1,361,279 + SGL_RS08255 0.49 +0.0
Or see this region's nucleotide sequence