Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07655

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07650 and SGL_RS07655 are separated by 93 nucleotidesSGL_RS07655 and SGL_RS07660 are separated by 167 nucleotidesSGL_RS07660 and SGL_RS07665 are separated by 106 nucleotides SGL_RS07650: SGL_RS07650 - aminoglycoside phosphotransferase family protein, at 1,236,316 to 1,237,449 _RS07650 SGL_RS07655: SGL_RS07655 - phosphoglucosamine mutase, at 1,237,543 to 1,238,988 _RS07655 SGL_RS07660: SGL_RS07660 - ferredoxin family protein, at 1,239,156 to 1,239,383 _RS07660 SGL_RS07665: SGL_RS07665 - ABC transporter ATP-binding protein, at 1,239,490 to 1,240,212 _RS07665 Position (kb) 1237 1238 1239Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1236.588 kb on - strand, within SGL_RS07650at 1236.724 kb on - strand, within SGL_RS07650at 1236.726 kb on + strand, within SGL_RS07650at 1236.734 kb on - strand, within SGL_RS07650at 1236.753 kb on - strand, within SGL_RS07650at 1236.856 kb on - strand, within SGL_RS07650at 1237.079 kb on - strand, within SGL_RS07650at 1237.081 kb on + strand, within SGL_RS07650at 1237.090 kb on - strand, within SGL_RS07650at 1237.480 kb on + strandat 1237.579 kb on - strandat 1237.579 kb on - strandat 1237.636 kb on + strandat 1237.705 kb on + strand, within SGL_RS07655at 1237.920 kb on - strand, within SGL_RS07655at 1238.217 kb on + strand, within SGL_RS07655at 1238.305 kb on - strand, within SGL_RS07655at 1238.320 kb on + strand, within SGL_RS07655at 1238.354 kb on + strand, within SGL_RS07655at 1238.454 kb on + strand, within SGL_RS07655at 1238.456 kb on + strand, within SGL_RS07655at 1238.462 kb on - strand, within SGL_RS07655at 1238.462 kb on - strand, within SGL_RS07655at 1238.462 kb on - strand, within SGL_RS07655at 1238.462 kb on - strand, within SGL_RS07655at 1238.462 kb on - strand, within SGL_RS07655at 1238.514 kb on + strand, within SGL_RS07655at 1238.631 kb on - strand, within SGL_RS07655at 1238.694 kb on + strand, within SGL_RS07655at 1238.694 kb on + strand, within SGL_RS07655at 1238.697 kb on - strand, within SGL_RS07655at 1238.700 kb on + strand, within SGL_RS07655at 1238.702 kb on - strand, within SGL_RS07655at 1238.702 kb on - strand, within SGL_RS07655at 1238.702 kb on - strand, within SGL_RS07655at 1238.718 kb on - strand, within SGL_RS07655at 1238.718 kb on - strand, within SGL_RS07655at 1239.102 kb on - strandat 1239.335 kb on - strand, within SGL_RS07660at 1239.386 kb on - strandat 1239.386 kb on - strandat 1239.494 kb on - strandat 1239.516 kb on - strandat 1239.583 kb on + strand, within SGL_RS07665at 1239.640 kb on + strand, within SGL_RS07665at 1239.830 kb on + strand, within SGL_RS07665at 1239.830 kb on + strand, within SGL_RS07665at 1239.830 kb on + strand, within SGL_RS07665at 1239.838 kb on - strand, within SGL_RS07665at 1239.940 kb on - strand, within SGL_RS07665at 1239.944 kb on + strand, within SGL_RS07665at 1239.985 kb on + strand, within SGL_RS07665

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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1,236,588 - SGL_RS07650 0.24 +1.8
1,236,724 - SGL_RS07650 0.36 +2.5
1,236,726 + SGL_RS07650 0.36 +2.2
1,236,734 - SGL_RS07650 0.37 +2.8
1,236,753 - SGL_RS07650 0.39 +2.5
1,236,856 - SGL_RS07650 0.48 +2.4
1,237,079 - SGL_RS07650 0.67 +2.2
1,237,081 + SGL_RS07650 0.67 +2.3
1,237,090 - SGL_RS07650 0.68 +0.9
1,237,480 + -0.2
1,237,579 - +0.1
1,237,579 - -1.5
1,237,636 + -1.2
1,237,705 + SGL_RS07655 0.11 -1.7
1,237,920 - SGL_RS07655 0.26 -1.4
1,238,217 + SGL_RS07655 0.47 -0.8
1,238,305 - SGL_RS07655 0.53 -1.7
1,238,320 + SGL_RS07655 0.54 -0.3
1,238,354 + SGL_RS07655 0.56 -2.5
1,238,454 + SGL_RS07655 0.63 -1.6
1,238,456 + SGL_RS07655 0.63 -2.4
1,238,462 - SGL_RS07655 0.64 -1.0
1,238,462 - SGL_RS07655 0.64 -0.9
1,238,462 - SGL_RS07655 0.64 -3.8
1,238,462 - SGL_RS07655 0.64 -2.7
1,238,462 - SGL_RS07655 0.64 -2.7
1,238,514 + SGL_RS07655 0.67 -1.2
1,238,631 - SGL_RS07655 0.75 -1.0
1,238,694 + SGL_RS07655 0.80 -2.7
1,238,694 + SGL_RS07655 0.80 -1.3
1,238,697 - SGL_RS07655 0.80 -2.2
1,238,700 + SGL_RS07655 0.80 -1.8
1,238,702 - SGL_RS07655 0.80 -4.7
1,238,702 - SGL_RS07655 0.80 -1.6
1,238,702 - SGL_RS07655 0.80 -1.8
1,238,718 - SGL_RS07655 0.81 -0.3
1,238,718 - SGL_RS07655 0.81 -3.0
1,239,102 - +1.7
1,239,335 - SGL_RS07660 0.79 +1.2
1,239,386 - -3.7
1,239,386 - -4.2
1,239,494 - +0.1
1,239,516 - -1.7
1,239,583 + SGL_RS07665 0.13 -1.2
1,239,640 + SGL_RS07665 0.21 -1.1
1,239,830 + SGL_RS07665 0.47 +0.4
1,239,830 + SGL_RS07665 0.47 -0.6
1,239,830 + SGL_RS07665 0.47 +0.0
1,239,838 - SGL_RS07665 0.48 -2.7
1,239,940 - SGL_RS07665 0.62 -3.6
1,239,944 + SGL_RS07665 0.63 -0.5
1,239,985 + SGL_RS07665 0.68 -1.0

Or see this region's nucleotide sequence