Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07280

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07265 and SGL_RS07270 are separated by 87 nucleotidesSGL_RS07270 and SGL_RS07275 are separated by 76 nucleotidesSGL_RS07275 and SGL_RS07280 are separated by 53 nucleotidesSGL_RS07280 and SGL_RS07285 are separated by 119 nucleotides SGL_RS07265: SGL_RS07265 - AarF/ABC1/UbiB kinase family protein, at 1,154,857 to 1,156,083 _RS07265 SGL_RS07270: SGL_RS07270 - hypothetical protein, at 1,156,171 to 1,156,503 _RS07270 SGL_RS07275: SGL_RS07275 - clan AA aspartic protease, at 1,156,580 to 1,156,975 _RS07275 SGL_RS07280: SGL_RS07280 - excinuclease ABC subunit UvrC, at 1,157,029 to 1,158,909 _RS07280 SGL_RS07285: SGL_RS07285 - N-acetylmuramoyl-L-alanine amidase, at 1,159,029 to 1,160,804 _RS07285 Position (kb) 1157 1158 1159Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1156.304 kb on - strand, within SGL_RS07270at 1157.226 kb on + strand, within SGL_RS07280at 1157.868 kb on - strand, within SGL_RS07280at 1157.985 kb on - strand, within SGL_RS07280at 1158.470 kb on + strand, within SGL_RS07280at 1158.691 kb on + strand, within SGL_RS07280at 1158.719 kb on + strand, within SGL_RS07280at 1159.082 kb on + strandat 1159.100 kb on - strandat 1159.482 kb on + strand, within SGL_RS07285at 1159.502 kb on - strand, within SGL_RS07285at 1159.594 kb on - strand, within SGL_RS07285at 1159.594 kb on - strand, within SGL_RS07285at 1159.747 kb on + strand, within SGL_RS07285at 1159.767 kb on + strand, within SGL_RS07285at 1159.844 kb on - strand, within SGL_RS07285at 1159.876 kb on + strand, within SGL_RS07285

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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1,156,304 - SGL_RS07270 0.40 +0.7
1,157,226 + SGL_RS07280 0.10 +0.5
1,157,868 - SGL_RS07280 0.45 -1.6
1,157,985 - SGL_RS07280 0.51 -0.2
1,158,470 + SGL_RS07280 0.77 -2.4
1,158,691 + SGL_RS07280 0.88 -0.5
1,158,719 + SGL_RS07280 0.90 -0.1
1,159,082 + -1.6
1,159,100 - -3.3
1,159,482 + SGL_RS07285 0.26 -2.6
1,159,502 - SGL_RS07285 0.27 -2.6
1,159,594 - SGL_RS07285 0.32 -3.9
1,159,594 - SGL_RS07285 0.32 -3.6
1,159,747 + SGL_RS07285 0.40 -4.5
1,159,767 + SGL_RS07285 0.42 -4.0
1,159,844 - SGL_RS07285 0.46 -2.7
1,159,876 + SGL_RS07285 0.48 -4.5

Or see this region's nucleotide sequence