Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07125

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07115 and SGL_RS07120 are separated by 296 nucleotidesSGL_RS07120 and SGL_RS07125 are separated by 180 nucleotidesSGL_RS07125 and SGL_RS07130 are separated by 305 nucleotides SGL_RS07115: SGL_RS07115 - hypothetical protein, at 1,121,627 to 1,123,144 _RS07115 SGL_RS07120: SGL_RS07120 - hypothetical protein, at 1,123,441 to 1,123,890 _RS07120 SGL_RS07125: SGL_RS07125 - translocation/assembly module TamB domain-containing protein, at 1,124,071 to 1,130,007 _RS07125 SGL_RS07130: SGL_RS07130 - AAA-like domain-containing protein, at 1,130,313 to 1,131,683 _RS07130 Position (kb) 1124 1125 1126 1127 1128 1129 1130 1131Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 1123.073 kb on + strandat 1123.081 kb on - strandat 1123.184 kb on + strandat 1123.316 kb on - strandat 1123.386 kb on + strandat 1123.386 kb on + strandat 1123.446 kb on - strandat 1123.541 kb on - strand, within SGL_RS07120at 1123.546 kb on + strand, within SGL_RS07120at 1123.672 kb on + strand, within SGL_RS07120at 1123.710 kb on + strand, within SGL_RS07120at 1123.760 kb on + strand, within SGL_RS07120at 1123.767 kb on + strand, within SGL_RS07120at 1123.777 kb on + strand, within SGL_RS07120at 1123.809 kb on + strand, within SGL_RS07120at 1124.236 kb on - strandat 1124.268 kb on + strandat 1124.276 kb on - strandat 1124.326 kb on + strandat 1124.340 kb on - strandat 1124.386 kb on + strandat 1124.400 kb on - strandat 1124.569 kb on + strandat 1124.574 kb on + strandat 1124.767 kb on - strand, within SGL_RS07125at 1124.825 kb on + strand, within SGL_RS07125at 1124.830 kb on - strand, within SGL_RS07125at 1124.905 kb on + strand, within SGL_RS07125at 1124.943 kb on - strand, within SGL_RS07125at 1125.089 kb on + strand, within SGL_RS07125at 1125.238 kb on - strand, within SGL_RS07125at 1125.337 kb on + strand, within SGL_RS07125at 1125.365 kb on + strand, within SGL_RS07125at 1125.475 kb on - strand, within SGL_RS07125at 1125.482 kb on - strand, within SGL_RS07125at 1125.482 kb on - strand, within SGL_RS07125at 1125.490 kb on + strand, within SGL_RS07125at 1125.735 kb on - strand, within SGL_RS07125at 1125.737 kb on + strand, within SGL_RS07125at 1125.757 kb on + strand, within SGL_RS07125at 1125.944 kb on - strand, within SGL_RS07125at 1126.031 kb on + strand, within SGL_RS07125at 1126.049 kb on + strand, within SGL_RS07125at 1126.057 kb on - strand, within SGL_RS07125at 1126.137 kb on + strand, within SGL_RS07125at 1126.145 kb on - strand, within SGL_RS07125at 1126.293 kb on + strand, within SGL_RS07125at 1126.453 kb on + strand, within SGL_RS07125at 1126.489 kb on - strand, within SGL_RS07125at 1126.574 kb on - strand, within SGL_RS07125at 1126.639 kb on - strand, within SGL_RS07125at 1126.677 kb on - strand, within SGL_RS07125at 1126.838 kb on + strand, within SGL_RS07125at 1127.082 kb on + strand, within SGL_RS07125at 1127.106 kb on - strand, within SGL_RS07125at 1127.164 kb on + strand, within SGL_RS07125at 1127.164 kb on + strand, within SGL_RS07125at 1127.172 kb on - strand, within SGL_RS07125at 1127.181 kb on + strand, within SGL_RS07125at 1127.189 kb on - strand, within SGL_RS07125at 1127.196 kb on + strand, within SGL_RS07125at 1127.201 kb on + strand, within SGL_RS07125at 1127.413 kb on - strand, within SGL_RS07125at 1127.452 kb on + strand, within SGL_RS07125at 1127.460 kb on - strand, within SGL_RS07125at 1127.567 kb on + strand, within SGL_RS07125at 1127.580 kb on - strand, within SGL_RS07125at 1127.613 kb on + strand, within SGL_RS07125at 1127.658 kb on + strand, within SGL_RS07125at 1127.668 kb on + strand, within SGL_RS07125at 1127.673 kb on + strand, within SGL_RS07125at 1127.673 kb on - strand, within SGL_RS07125at 1127.759 kb on + strand, within SGL_RS07125at 1127.759 kb on + strand, within SGL_RS07125at 1127.767 kb on - strand, within SGL_RS07125at 1127.855 kb on + strand, within SGL_RS07125at 1127.951 kb on - strand, within SGL_RS07125at 1127.962 kb on + strand, within SGL_RS07125at 1127.971 kb on + strand, within SGL_RS07125at 1128.053 kb on + strand, within SGL_RS07125at 1128.108 kb on - strand, within SGL_RS07125at 1128.239 kb on - strand, within SGL_RS07125at 1128.244 kb on + strand, within SGL_RS07125at 1128.244 kb on + strand, within SGL_RS07125at 1128.252 kb on - strand, within SGL_RS07125at 1128.290 kb on + strand, within SGL_RS07125at 1128.358 kb on - strand, within SGL_RS07125at 1128.422 kb on + strand, within SGL_RS07125at 1128.550 kb on - strand, within SGL_RS07125at 1128.584 kb on - strand, within SGL_RS07125at 1128.699 kb on - strand, within SGL_RS07125at 1128.716 kb on - strand, within SGL_RS07125at 1128.719 kb on + strand, within SGL_RS07125at 1128.727 kb on - strand, within SGL_RS07125at 1128.843 kb on - strand, within SGL_RS07125at 1128.867 kb on - strand, within SGL_RS07125at 1128.876 kb on - strand, within SGL_RS07125at 1128.921 kb on - strand, within SGL_RS07125at 1128.959 kb on - strand, within SGL_RS07125at 1129.033 kb on + strand, within SGL_RS07125at 1129.054 kb on - strand, within SGL_RS07125at 1129.056 kb on + strand, within SGL_RS07125at 1129.064 kb on - strand, within SGL_RS07125at 1129.119 kb on - strand, within SGL_RS07125at 1129.133 kb on + strand, within SGL_RS07125at 1129.133 kb on + strand, within SGL_RS07125at 1129.196 kb on + strand, within SGL_RS07125at 1129.225 kb on + strand, within SGL_RS07125at 1129.233 kb on - strand, within SGL_RS07125at 1129.427 kb on + strandat 1129.434 kb on - strandat 1129.435 kb on - strandat 1129.468 kb on + strandat 1129.580 kb on + strandat 1129.589 kb on - strandat 1129.796 kb on + strandat 1129.876 kb on - strandat 1129.887 kb on + strandat 1129.995 kb on + strandat 1130.058 kb on + strandat 1130.061 kb on - strandat 1130.062 kb on - strandat 1130.063 kb on + strandat 1130.692 kb on + strand, within SGL_RS07130at 1130.816 kb on - strand, within SGL_RS07130

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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1,123,073 + -1.5
1,123,081 - -0.6
1,123,184 + -0.2
1,123,316 - +0.7
1,123,386 + +2.0
1,123,386 + -0.2
1,123,446 - -0.3
1,123,541 - SGL_RS07120 0.22 -0.0
1,123,546 + SGL_RS07120 0.23 -0.4
1,123,672 + SGL_RS07120 0.51 -0.4
1,123,710 + SGL_RS07120 0.60 -1.6
1,123,760 + SGL_RS07120 0.71 -0.4
1,123,767 + SGL_RS07120 0.72 +0.0
1,123,777 + SGL_RS07120 0.75 -1.7
1,123,809 + SGL_RS07120 0.82 -0.1
1,124,236 - -2.7
1,124,268 + -2.4
1,124,276 - -2.5
1,124,326 + -3.1
1,124,340 - -3.9
1,124,386 + -1.9
1,124,400 - -3.3
1,124,569 + -3.4
1,124,574 + -4.3
1,124,767 - SGL_RS07125 0.12 -1.9
1,124,825 + SGL_RS07125 0.13 -5.2
1,124,830 - SGL_RS07125 0.13 -2.7
1,124,905 + SGL_RS07125 0.14 -2.3
1,124,943 - SGL_RS07125 0.15 -4.6
1,125,089 + SGL_RS07125 0.17 -3.2
1,125,238 - SGL_RS07125 0.20 -3.3
1,125,337 + SGL_RS07125 0.21 -2.7
1,125,365 + SGL_RS07125 0.22 -4.4
1,125,475 - SGL_RS07125 0.24 -2.4
1,125,482 - SGL_RS07125 0.24 -6.3
1,125,482 - SGL_RS07125 0.24 -1.3
1,125,490 + SGL_RS07125 0.24 -3.2
1,125,735 - SGL_RS07125 0.28 -2.1
1,125,737 + SGL_RS07125 0.28 -3.1
1,125,757 + SGL_RS07125 0.28 -3.8
1,125,944 - SGL_RS07125 0.32 -0.5
1,126,031 + SGL_RS07125 0.33 -5.1
1,126,049 + SGL_RS07125 0.33 -3.8
1,126,057 - SGL_RS07125 0.33 -3.3
1,126,137 + SGL_RS07125 0.35 -3.6
1,126,145 - SGL_RS07125 0.35 -4.4
1,126,293 + SGL_RS07125 0.37 -3.8
1,126,453 + SGL_RS07125 0.40 -3.0
1,126,489 - SGL_RS07125 0.41 -2.1
1,126,574 - SGL_RS07125 0.42 -2.1
1,126,639 - SGL_RS07125 0.43 -4.6
1,126,677 - SGL_RS07125 0.44 -1.6
1,126,838 + SGL_RS07125 0.47 -2.5
1,127,082 + SGL_RS07125 0.51 +0.5
1,127,106 - SGL_RS07125 0.51 -3.9
1,127,164 + SGL_RS07125 0.52 -3.6
1,127,164 + SGL_RS07125 0.52 -0.8
1,127,172 - SGL_RS07125 0.52 -3.8
1,127,181 + SGL_RS07125 0.52 -0.9
1,127,189 - SGL_RS07125 0.53 -3.2
1,127,196 + SGL_RS07125 0.53 -4.7
1,127,201 + SGL_RS07125 0.53 -2.3
1,127,413 - SGL_RS07125 0.56 +3.1
1,127,452 + SGL_RS07125 0.57 -3.6
1,127,460 - SGL_RS07125 0.57 -3.4
1,127,567 + SGL_RS07125 0.59 -2.2
1,127,580 - SGL_RS07125 0.59 -2.7
1,127,613 + SGL_RS07125 0.60 -2.4
1,127,658 + SGL_RS07125 0.60 -0.9
1,127,668 + SGL_RS07125 0.61 -1.6
1,127,673 + SGL_RS07125 0.61 -1.9
1,127,673 - SGL_RS07125 0.61 -2.6
1,127,759 + SGL_RS07125 0.62 -4.2
1,127,759 + SGL_RS07125 0.62 -2.7
1,127,767 - SGL_RS07125 0.62 -2.7
1,127,855 + SGL_RS07125 0.64 -4.5
1,127,951 - SGL_RS07125 0.65 -3.5
1,127,962 + SGL_RS07125 0.66 -3.0
1,127,971 + SGL_RS07125 0.66 -1.9
1,128,053 + SGL_RS07125 0.67 -2.3
1,128,108 - SGL_RS07125 0.68 -0.5
1,128,239 - SGL_RS07125 0.70 -3.1
1,128,244 + SGL_RS07125 0.70 -1.6
1,128,244 + SGL_RS07125 0.70 -2.8
1,128,252 - SGL_RS07125 0.70 -1.4
1,128,290 + SGL_RS07125 0.71 -2.4
1,128,358 - SGL_RS07125 0.72 -2.0
1,128,422 + SGL_RS07125 0.73 -4.5
1,128,550 - SGL_RS07125 0.75 -4.5
1,128,584 - SGL_RS07125 0.76 -1.5
1,128,699 - SGL_RS07125 0.78 -4.7
1,128,716 - SGL_RS07125 0.78 -2.5
1,128,719 + SGL_RS07125 0.78 -1.8
1,128,727 - SGL_RS07125 0.78 -0.8
1,128,843 - SGL_RS07125 0.80 -4.6
1,128,867 - SGL_RS07125 0.81 -2.5
1,128,876 - SGL_RS07125 0.81 -4.3
1,128,921 - SGL_RS07125 0.82 -3.8
1,128,959 - SGL_RS07125 0.82 -3.6
1,129,033 + SGL_RS07125 0.84 -3.3
1,129,054 - SGL_RS07125 0.84 -2.9
1,129,056 + SGL_RS07125 0.84 -4.1
1,129,064 - SGL_RS07125 0.84 +0.1
1,129,119 - SGL_RS07125 0.85 -4.0
1,129,133 + SGL_RS07125 0.85 -4.6
1,129,133 + SGL_RS07125 0.85 -4.6
1,129,196 + SGL_RS07125 0.86 -4.6
1,129,225 + SGL_RS07125 0.87 -2.4
1,129,233 - SGL_RS07125 0.87 -3.3
1,129,427 + -1.8
1,129,434 - -1.4
1,129,435 - -2.7
1,129,468 + -2.4
1,129,580 + -0.6
1,129,589 - -2.9
1,129,796 + -3.1
1,129,876 - -2.4
1,129,887 + -4.3
1,129,995 + -1.8
1,130,058 + -1.0
1,130,061 - -0.8
1,130,062 - -0.8
1,130,063 + -3.1
1,130,692 + SGL_RS07130 0.28 -0.5
1,130,816 - SGL_RS07130 0.37 +0.0

Or see this region's nucleotide sequence