Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06030 and SGL_RS06035 are separated by 188 nucleotides SGL_RS06035 and SGL_RS06040 are separated by 186 nucleotides SGL_RS06040 and SGL_RS06045 are separated by 73 nucleotides
SGL_RS06030: SGL_RS06030 - HhoA/HhoB/HtrA family serine endopeptidase, at 886,283 to 887,542
_RS06030
SGL_RS06035: SGL_RS06035 - Rieske (2Fe-2S) protein, at 887,731 to 888,084
_RS06035
SGL_RS06040: SGL_RS06040 - DUF1997 domain-containing protein, at 888,271 to 888,993
_RS06040
SGL_RS06045: SGL_RS06045 - efflux RND transporter periplasmic adaptor subunit, at 889,067 to 890,605
_RS06045
Position (kb) 888
889 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 887.298 kb on - strand, within SGL_RS06030 at 887.315 kb on - strand, within SGL_RS06030 at 887.348 kb on - strand, within SGL_RS06030 at 887.360 kb on - strand, within SGL_RS06030 at 887.428 kb on - strand at 887.521 kb on + strand at 887.521 kb on + strand at 887.582 kb on - strand at 887.635 kb on - strand at 887.636 kb on - strand at 887.646 kb on - strand at 887.646 kb on - strand at 887.675 kb on + strand at 887.753 kb on + strand at 887.856 kb on - strand, within SGL_RS06035 at 887.959 kb on + strand, within SGL_RS06035 at 887.964 kb on - strand, within SGL_RS06035 at 887.965 kb on + strand, within SGL_RS06035 at 888.092 kb on + strand at 888.396 kb on + strand, within SGL_RS06040 at 888.400 kb on - strand, within SGL_RS06040 at 888.420 kb on - strand, within SGL_RS06040 at 888.425 kb on + strand, within SGL_RS06040 at 888.590 kb on + strand, within SGL_RS06040 at 888.713 kb on - strand, within SGL_RS06040 at 888.754 kb on + strand, within SGL_RS06040 at 888.781 kb on - strand, within SGL_RS06040 at 888.957 kb on + strand at 888.987 kb on + strand at 889.018 kb on - strand at 889.078 kb on - strand at 889.177 kb on - strand at 889.219 kb on - strand at 889.262 kb on + strand, within SGL_RS06045 at 889.437 kb on + strand, within SGL_RS06045 at 889.440 kb on - strand, within SGL_RS06045 at 889.442 kb on + strand, within SGL_RS06045 at 889.512 kb on + strand, within SGL_RS06045 at 889.522 kb on + strand, within SGL_RS06045 at 889.525 kb on - strand, within SGL_RS06045 at 889.553 kb on + strand, within SGL_RS06045 at 889.597 kb on + strand, within SGL_RS06045 at 889.705 kb on - strand, within SGL_RS06045 at 889.788 kb on - strand, within SGL_RS06045 at 889.853 kb on + strand, within SGL_RS06045 at 889.853 kb on + strand, within SGL_RS06045 at 889.892 kb on + strand, within SGL_RS06045 at 889.964 kb on - strand, within SGL_RS06045
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 887,298 - SGL_RS06030 0.81 +2.5 887,315 - SGL_RS06030 0.82 +3.5 887,348 - SGL_RS06030 0.85 +3.0 887,360 - SGL_RS06030 0.85 +1.6 887,428 - +4.6 887,521 + +1.1 887,521 + +0.7 887,582 - -1.1 887,635 - -0.0 887,636 - -0.8 887,646 - -0.2 887,646 - -0.3 887,675 + -0.7 887,753 + -0.4 887,856 - SGL_RS06035 0.35 -0.2 887,959 + SGL_RS06035 0.64 -0.5 887,964 - SGL_RS06035 0.66 -0.6 887,965 + SGL_RS06035 0.66 +3.3 888,092 + -1.7 888,396 + SGL_RS06040 0.17 -1.3 888,400 - SGL_RS06040 0.18 -1.9 888,420 - SGL_RS06040 0.21 -1.7 888,425 + SGL_RS06040 0.21 -2.8 888,590 + SGL_RS06040 0.44 -3.3 888,713 - SGL_RS06040 0.61 -2.3 888,754 + SGL_RS06040 0.67 -2.5 888,781 - SGL_RS06040 0.71 -1.2 888,957 + -0.8 888,987 + +0.5 889,018 - -0.0 889,078 - +2.4 889,177 - +2.3 889,219 - +1.4 889,262 + SGL_RS06045 0.13 +2.3 889,437 + SGL_RS06045 0.24 +2.4 889,440 - SGL_RS06045 0.24 +2.4 889,442 + SGL_RS06045 0.24 +1.8 889,512 + SGL_RS06045 0.29 +1.9 889,522 + SGL_RS06045 0.30 +2.4 889,525 - SGL_RS06045 0.30 +2.2 889,553 + SGL_RS06045 0.32 +2.2 889,597 + SGL_RS06045 0.34 +1.5 889,705 - SGL_RS06045 0.41 +1.1 889,788 - SGL_RS06045 0.47 +3.0 889,853 + SGL_RS06045 0.51 +1.9 889,853 + SGL_RS06045 0.51 +1.9 889,892 + SGL_RS06045 0.54 +1.7 889,964 - SGL_RS06045 0.58 +5.4
Or see this region's nucleotide sequence