Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05525

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS05520 and SGL_RS05525 are separated by 4 nucleotidesSGL_RS05525 and SGL_RS05530 are separated by 449 nucleotides SGL_RS05520: SGL_RS05520 - argininosuccinate lyase, at 783,379 to 784,764 _RS05520 SGL_RS05525: SGL_RS05525 - NUDIX hydrolase, at 784,769 to 785,215 _RS05525 SGL_RS05530: SGL_RS05530 - KAP family NTPase, at 785,665 to 787,812 _RS05530 Position (kb) 784 785 786Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 784.818 kb on + strand, within SGL_RS05525at 784.887 kb on - strand, within SGL_RS05525at 784.887 kb on - strand, within SGL_RS05525at 785.438 kb on - strandat 785.557 kb on + strandat 785.572 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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784,818 + SGL_RS05525 0.11 -0.6
784,887 - SGL_RS05525 0.26 -4.5
784,887 - SGL_RS05525 0.26 -4.2
785,438 - +0.2
785,557 + +1.2
785,572 + -0.5

Or see this region's nucleotide sequence