Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05110 and SGL_RS05115 are separated by 15 nucleotides SGL_RS05115 and SGL_RS05120 are separated by 264 nucleotides SGL_RS05120 and SGL_RS05125 are separated by 7 nucleotides SGL_RS05125 and SGL_RS05130 are separated by 323 nucleotides SGL_RS05130 and SGL_RS05135 are separated by 64 nucleotides
SGL_RS05110: SGL_RS05110 - ATP-dependent zinc metalloprotease FtsH1, at 695,975 to 697,972
_RS05110
SGL_RS05115: SGL_RS05115 - hypothetical protein, at 697,988 to 698,458
_RS05115
SGL_RS05120: SGL_RS05120 - ferrous iron transport protein A, at 698,723 to 698,962
_RS05120
SGL_RS05125: SGL_RS05125 - ferrous iron transport protein B, at 698,970 to 700,814
_RS05125
SGL_RS05130: SGL_RS05130 - chlorophyll a/b-binding protein, at 701,138 to 701,350
_RS05130
SGL_RS05135: SGL_RS05135 - GAF domain-containing protein, at 701,415 to 704,267
_RS05135
Position (kb) 698
699
700
701 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 697.981 kb on - strand at 698.091 kb on - strand, within SGL_RS05115 at 698.106 kb on + strand, within SGL_RS05115 at 698.485 kb on + strand at 698.574 kb on + strand at 698.789 kb on + strand, within SGL_RS05120 at 698.797 kb on - strand, within SGL_RS05120 at 698.797 kb on - strand, within SGL_RS05120 at 698.965 kb on - strand at 698.970 kb on - strand at 698.985 kb on - strand at 699.055 kb on - strand at 699.149 kb on + strand at 699.201 kb on + strand, within SGL_RS05125 at 699.380 kb on + strand, within SGL_RS05125 at 699.388 kb on - strand, within SGL_RS05125 at 699.388 kb on - strand, within SGL_RS05125 at 699.421 kb on + strand, within SGL_RS05125 at 699.441 kb on - strand, within SGL_RS05125 at 699.625 kb on + strand, within SGL_RS05125 at 699.633 kb on - strand, within SGL_RS05125 at 699.877 kb on - strand, within SGL_RS05125 at 699.934 kb on + strand, within SGL_RS05125 at 699.985 kb on - strand, within SGL_RS05125 at 699.990 kb on + strand, within SGL_RS05125 at 699.997 kb on + strand, within SGL_RS05125 at 700.032 kb on + strand, within SGL_RS05125 at 700.163 kb on - strand, within SGL_RS05125 at 700.176 kb on - strand, within SGL_RS05125 at 700.226 kb on - strand, within SGL_RS05125 at 700.317 kb on - strand, within SGL_RS05125 at 700.317 kb on - strand, within SGL_RS05125 at 701.155 kb on - strand at 701.597 kb on - strand at 701.659 kb on - strand at 701.659 kb on - strand at 701.692 kb on - strand at 701.705 kb on + strand, within SGL_RS05135 at 701.715 kb on + strand, within SGL_RS05135 at 701.723 kb on - strand, within SGL_RS05135 at 701.723 kb on - strand, within SGL_RS05135 at 701.778 kb on - strand, within SGL_RS05135
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 697,981 - +0.9 698,091 - SGL_RS05115 0.22 -1.0 698,106 + SGL_RS05115 0.25 -4.1 698,485 + -0.6 698,574 + -1.0 698,789 + SGL_RS05120 0.28 +1.3 698,797 - SGL_RS05120 0.31 +1.3 698,797 - SGL_RS05120 0.31 +1.8 698,965 - +0.7 698,970 - -2.5 698,985 - +1.9 699,055 - +0.9 699,149 + +0.9 699,201 + SGL_RS05125 0.13 +1.0 699,380 + SGL_RS05125 0.22 -0.8 699,388 - SGL_RS05125 0.23 +3.0 699,388 - SGL_RS05125 0.23 +1.9 699,421 + SGL_RS05125 0.24 +0.2 699,441 - SGL_RS05125 0.26 +0.9 699,625 + SGL_RS05125 0.36 -0.8 699,633 - SGL_RS05125 0.36 +0.8 699,877 - SGL_RS05125 0.49 +1.0 699,934 + SGL_RS05125 0.52 -1.5 699,985 - SGL_RS05125 0.55 -0.5 699,990 + SGL_RS05125 0.55 +1.5 699,997 + SGL_RS05125 0.56 -0.3 700,032 + SGL_RS05125 0.58 +1.4 700,163 - SGL_RS05125 0.65 -0.4 700,176 - SGL_RS05125 0.65 +0.1 700,226 - SGL_RS05125 0.68 -0.1 700,317 - SGL_RS05125 0.73 +1.2 700,317 - SGL_RS05125 0.73 +0.1 701,155 - -2.2 701,597 - -1.5 701,659 - -0.2 701,659 - -1.6 701,692 - -1.0 701,705 + SGL_RS05135 0.10 +0.8 701,715 + SGL_RS05135 0.11 +0.8 701,723 - SGL_RS05135 0.11 -0.3 701,723 - SGL_RS05135 0.11 -0.2 701,778 - SGL_RS05135 0.13 +0.9
Or see this region's nucleotide sequence