Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04680

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS04670 and SGL_RS04675 are separated by 131 nucleotidesSGL_RS04675 and SGL_RS04680 overlap by 4 nucleotidesSGL_RS04680 and SGL_RS04685 are separated by 108 nucleotides SGL_RS04670: SGL_RS04670 - hypothetical protein, at 598,484 to 598,930 _RS04670 SGL_RS04675: SGL_RS04675 - alpha/beta fold hydrolase, at 599,062 to 599,913 _RS04675 SGL_RS04680: SGL_RS04680 - DnaJ C-terminal domain-containing protein, at 599,910 to 600,833 _RS04680 SGL_RS04685: SGL_RS04685 - molecular chaperone DnaK, at 600,942 to 603,257 _RS04685 Position (kb) 599 600 601Strain fitness (log2 ratio) -2 -1 0 1at 598.911 kb on - strandat 599.019 kb on - strandat 599.039 kb on + strandat 599.113 kb on - strandat 599.225 kb on + strand, within SGL_RS04675at 599.254 kb on + strand, within SGL_RS04675at 599.420 kb on - strand, within SGL_RS04675at 599.420 kb on - strand, within SGL_RS04675at 599.420 kb on - strand, within SGL_RS04675at 599.478 kb on + strand, within SGL_RS04675at 599.478 kb on + strand, within SGL_RS04675at 599.486 kb on - strand, within SGL_RS04675at 599.555 kb on + strand, within SGL_RS04675at 599.684 kb on - strand, within SGL_RS04675at 599.798 kb on + strand, within SGL_RS04675at 599.878 kb on + strandat 599.878 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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598,911 - -0.1
599,019 - +0.9
599,039 + +0.1
599,113 - -0.2
599,225 + SGL_RS04675 0.19 -1.3
599,254 + SGL_RS04675 0.23 -0.3
599,420 - SGL_RS04675 0.42 +0.2
599,420 - SGL_RS04675 0.42 -0.7
599,420 - SGL_RS04675 0.42 -1.1
599,478 + SGL_RS04675 0.49 -0.0
599,478 + SGL_RS04675 0.49 +0.3
599,486 - SGL_RS04675 0.50 +0.5
599,555 + SGL_RS04675 0.58 -0.1
599,684 - SGL_RS04675 0.73 -0.0
599,798 + SGL_RS04675 0.86 +1.1
599,878 + -0.8
599,878 + -1.9

Or see this region's nucleotide sequence