Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04290 and SGL_RS04295 are separated by 129 nucleotides SGL_RS04295 and SGL_RS04300 are separated by 75 nucleotides
SGL_RS04290: SGL_RS04290 - nucleoside triphosphate pyrophosphohydrolase, at 516,088 to 516,897
_RS04290
SGL_RS04295: SGL_RS04295 - glycosyltransferase family 2 protein, at 517,027 to 518,211
_RS04295
SGL_RS04300: SGL_RS04300 - PAS domain S-box protein, at 518,287 to 520,272
_RS04300
Position (kb) 517
518
519 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 516.313 kb on - strand, within SGL_RS04290 at 516.381 kb on - strand, within SGL_RS04290 at 516.431 kb on + strand, within SGL_RS04290 at 516.590 kb on - strand, within SGL_RS04290 at 516.645 kb on + strand, within SGL_RS04290 at 516.663 kb on + strand, within SGL_RS04290 at 516.681 kb on - strand, within SGL_RS04290 at 516.758 kb on - strand, within SGL_RS04290 at 516.917 kb on + strand at 516.974 kb on + strand at 517.144 kb on - strand at 517.144 kb on - strand at 517.242 kb on + strand, within SGL_RS04295 at 517.250 kb on - strand, within SGL_RS04295 at 517.321 kb on - strand, within SGL_RS04295 at 517.337 kb on + strand, within SGL_RS04295 at 517.337 kb on + strand, within SGL_RS04295 at 517.345 kb on - strand, within SGL_RS04295 at 517.366 kb on + strand, within SGL_RS04295 at 517.440 kb on - strand, within SGL_RS04295 at 517.445 kb on - strand, within SGL_RS04295 at 517.486 kb on - strand, within SGL_RS04295 at 517.612 kb on - strand, within SGL_RS04295 at 517.704 kb on - strand, within SGL_RS04295 at 517.751 kb on + strand, within SGL_RS04295 at 517.751 kb on + strand, within SGL_RS04295 at 517.759 kb on - strand, within SGL_RS04295 at 517.759 kb on - strand, within SGL_RS04295 at 517.777 kb on - strand, within SGL_RS04295 at 517.787 kb on - strand, within SGL_RS04295 at 517.847 kb on + strand, within SGL_RS04295 at 517.865 kb on - strand, within SGL_RS04295 at 517.865 kb on - strand, within SGL_RS04295 at 517.924 kb on + strand, within SGL_RS04295 at 517.950 kb on + strand, within SGL_RS04295 at 517.996 kb on + strand, within SGL_RS04295 at 518.001 kb on - strand, within SGL_RS04295 at 518.016 kb on + strand, within SGL_RS04295 at 518.030 kb on - strand, within SGL_RS04295 at 518.076 kb on - strand, within SGL_RS04295 at 518.134 kb on - strand at 518.173 kb on - strand at 518.191 kb on + strand at 518.199 kb on - strand at 518.361 kb on + strand at 518.421 kb on - strand at 518.427 kb on - strand at 519.034 kb on + strand, within SGL_RS04300
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 516,313 - SGL_RS04290 0.28 -0.2 516,381 - SGL_RS04290 0.36 -0.0 516,431 + SGL_RS04290 0.42 -2.1 516,590 - SGL_RS04290 0.62 -0.8 516,645 + SGL_RS04290 0.69 -1.3 516,663 + SGL_RS04290 0.71 -0.6 516,681 - SGL_RS04290 0.73 -0.2 516,758 - SGL_RS04290 0.83 -1.2 516,917 + -1.7 516,974 + -1.9 517,144 - -0.3 517,144 - -1.5 517,242 + SGL_RS04295 0.18 -0.8 517,250 - SGL_RS04295 0.19 -1.5 517,321 - SGL_RS04295 0.25 +1.5 517,337 + SGL_RS04295 0.26 -1.6 517,337 + SGL_RS04295 0.26 -2.5 517,345 - SGL_RS04295 0.27 -0.8 517,366 + SGL_RS04295 0.29 -2.1 517,440 - SGL_RS04295 0.35 -0.7 517,445 - SGL_RS04295 0.35 -0.3 517,486 - SGL_RS04295 0.39 -0.1 517,612 - SGL_RS04295 0.49 -1.4 517,704 - SGL_RS04295 0.57 +1.8 517,751 + SGL_RS04295 0.61 -1.1 517,751 + SGL_RS04295 0.61 -0.3 517,759 - SGL_RS04295 0.62 -1.5 517,759 - SGL_RS04295 0.62 -1.0 517,777 - SGL_RS04295 0.63 -1.2 517,787 - SGL_RS04295 0.64 -2.1 517,847 + SGL_RS04295 0.69 +0.7 517,865 - SGL_RS04295 0.71 -0.3 517,865 - SGL_RS04295 0.71 -1.4 517,924 + SGL_RS04295 0.76 -0.7 517,950 + SGL_RS04295 0.78 -0.4 517,996 + SGL_RS04295 0.82 +0.3 518,001 - SGL_RS04295 0.82 -4.3 518,016 + SGL_RS04295 0.83 -0.9 518,030 - SGL_RS04295 0.85 -0.2 518,076 - SGL_RS04295 0.89 -2.5 518,134 - -3.0 518,173 - +1.2 518,191 + -0.9 518,199 - -2.6 518,361 + +1.1 518,421 - -1.7 518,427 - -1.4 519,034 + SGL_RS04300 0.38 +2.6
Or see this region's nucleotide sequence