Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03235 and SGL_RS03240 are separated by 56 nucleotides SGL_RS03240 and SGL_RS03245 are separated by 451 nucleotides SGL_RS03245 and SGL_RS03250 are separated by 81 nucleotides SGL_RS03250 and SGL_RS19555 are separated by 10 nucleotides
SGL_RS03235: SGL_RS03235 - C-3',4' desaturase CrtD, at 289,322 to 290,845
_RS03235
SGL_RS03240: SGL_RS03240 - YggT family protein, at 290,902 to 291,174
_RS03240
SGL_RS03245: SGL_RS03245 - Fe(3+) ABC transporter substrate-binding protein, at 291,626 to 292,708
_RS03245
SGL_RS03250: SGL_RS03250 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 292,790 to 293,485
_RS03250
SGL_RS19555: SGL_RS19555 - hypothetical protein, at 293,496 to 293,669
_RS19555
Position (kb) 291
292
293 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 290.645 kb on + strand, within SGL_RS03235 at 290.670 kb on + strand, within SGL_RS03235 at 290.691 kb on + strand, within SGL_RS03235 at 290.691 kb on + strand, within SGL_RS03235 at 290.824 kb on - strand at 290.939 kb on + strand, within SGL_RS03240 at 290.940 kb on + strand, within SGL_RS03240 at 291.003 kb on - strand, within SGL_RS03240 at 291.062 kb on + strand, within SGL_RS03240 at 291.062 kb on + strand, within SGL_RS03240 at 291.070 kb on - strand, within SGL_RS03240 at 291.070 kb on - strand, within SGL_RS03240 at 291.070 kb on - strand, within SGL_RS03240 at 291.716 kb on - strand at 291.728 kb on - strand at 291.752 kb on - strand, within SGL_RS03245 at 291.771 kb on - strand, within SGL_RS03245 at 291.820 kb on - strand, within SGL_RS03245 at 291.891 kb on - strand, within SGL_RS03245 at 291.898 kb on + strand, within SGL_RS03245 at 291.898 kb on + strand, within SGL_RS03245 at 292.224 kb on + strand, within SGL_RS03245 at 292.230 kb on + strand, within SGL_RS03245 at 292.242 kb on - strand, within SGL_RS03245 at 292.248 kb on - strand, within SGL_RS03245 at 292.282 kb on - strand, within SGL_RS03245 at 292.307 kb on + strand, within SGL_RS03245 at 292.358 kb on - strand, within SGL_RS03245 at 292.371 kb on + strand, within SGL_RS03245 at 292.447 kb on + strand, within SGL_RS03245 at 292.471 kb on + strand, within SGL_RS03245 at 292.487 kb on + strand, within SGL_RS03245 at 292.489 kb on - strand, within SGL_RS03245 at 292.509 kb on + strand, within SGL_RS03245 at 292.659 kb on - strand at 292.661 kb on + strand at 292.669 kb on - strand at 292.669 kb on - strand at 292.781 kb on + strand at 292.895 kb on - strand, within SGL_RS03250 at 292.923 kb on + strand, within SGL_RS03250 at 293.154 kb on + strand, within SGL_RS03250 at 293.167 kb on - strand, within SGL_RS03250 at 293.227 kb on - strand, within SGL_RS03250 at 293.227 kb on - strand, within SGL_RS03250 at 293.330 kb on - strand, within SGL_RS03250 at 293.412 kb on + strand, within SGL_RS03250 at 293.585 kb on - strand, within SGL_RS19555 at 293.607 kb on - strand, within SGL_RS19555 at 293.698 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 290,645 + SGL_RS03235 0.87 -0.0 290,670 + SGL_RS03235 0.88 +1.0 290,691 + SGL_RS03235 0.90 -2.8 290,691 + SGL_RS03235 0.90 +1.7 290,824 - -0.2 290,939 + SGL_RS03240 0.14 +1.6 290,940 + SGL_RS03240 0.14 +1.6 291,003 - SGL_RS03240 0.37 +2.0 291,062 + SGL_RS03240 0.59 +1.4 291,062 + SGL_RS03240 0.59 +0.9 291,070 - SGL_RS03240 0.62 +1.2 291,070 - SGL_RS03240 0.62 +2.4 291,070 - SGL_RS03240 0.62 +2.1 291,716 - +1.1 291,728 - -0.8 291,752 - SGL_RS03245 0.12 -2.6 291,771 - SGL_RS03245 0.13 +1.2 291,820 - SGL_RS03245 0.18 +0.4 291,891 - SGL_RS03245 0.24 +0.9 291,898 + SGL_RS03245 0.25 -1.0 291,898 + SGL_RS03245 0.25 +0.4 292,224 + SGL_RS03245 0.55 +1.9 292,230 + SGL_RS03245 0.56 -2.4 292,242 - SGL_RS03245 0.57 +2.5 292,248 - SGL_RS03245 0.57 +1.3 292,282 - SGL_RS03245 0.61 +0.1 292,307 + SGL_RS03245 0.63 +1.5 292,358 - SGL_RS03245 0.68 +0.9 292,371 + SGL_RS03245 0.69 -0.2 292,447 + SGL_RS03245 0.76 +2.1 292,471 + SGL_RS03245 0.78 +0.4 292,487 + SGL_RS03245 0.80 +0.8 292,489 - SGL_RS03245 0.80 +0.1 292,509 + SGL_RS03245 0.82 -0.6 292,659 - -0.7 292,661 + +1.2 292,669 - +4.8 292,669 - -0.5 292,781 + -0.9 292,895 - SGL_RS03250 0.15 -1.1 292,923 + SGL_RS03250 0.19 -0.6 293,154 + SGL_RS03250 0.52 -0.7 293,167 - SGL_RS03250 0.54 -1.0 293,227 - SGL_RS03250 0.63 +0.9 293,227 - SGL_RS03250 0.63 -1.6 293,330 - SGL_RS03250 0.78 +1.8 293,412 + SGL_RS03250 0.89 -1.0 293,585 - SGL_RS19555 0.51 +0.3 293,607 - SGL_RS19555 0.64 +0.1 293,698 + -1.4
Or see this region's nucleotide sequence