Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03100 and SGL_RS03105 are separated by 38 nucleotides SGL_RS03105 and SGL_RS03110 are separated by 118 nucleotides SGL_RS03110 and SGL_RS03115 are separated by 56 nucleotides SGL_RS03115 and SGL_RS03120 are separated by 101 nucleotides
SGL_RS03100: SGL_RS03100 - DUF2288 domain-containing protein, at 264,190 to 264,477
_RS03100
SGL_RS03105: SGL_RS03105 - tetratricopeptide repeat protein, at 264,516 to 265,295
_RS03105
SGL_RS03110: SGL_RS03110 - J domain-containing protein, at 265,414 to 265,938
_RS03110
SGL_RS03115: SGL_RS03115 - thylakoid membrane photosystem I accumulation factor, at 265,995 to 266,600
_RS03115
SGL_RS03120: SGL_RS03120 - hypothetical protein, at 266,702 to 268,471
_RS03120
Position (kb) 265
266 Strain fitness (log2 ratio) -2
-1
0
1
2 at 264.459 kb on - strand at 264.522 kb on - strand at 264.632 kb on + strand, within SGL_RS03105 at 264.859 kb on + strand, within SGL_RS03105 at 264.918 kb on - strand, within SGL_RS03105 at 264.964 kb on + strand, within SGL_RS03105 at 265.025 kb on - strand, within SGL_RS03105 at 265.229 kb on - strand at 265.317 kb on - strand at 265.319 kb on + strand at 265.326 kb on + strand at 265.345 kb on + strand at 265.506 kb on + strand, within SGL_RS03110 at 265.566 kb on + strand, within SGL_RS03110 at 265.715 kb on + strand, within SGL_RS03110 at 265.723 kb on - strand, within SGL_RS03110 at 265.728 kb on - strand, within SGL_RS03110 at 265.827 kb on + strand, within SGL_RS03110 at 265.877 kb on + strand, within SGL_RS03110 at 265.887 kb on + strand at 265.971 kb on + strand at 266.005 kb on - strand at 266.214 kb on - strand, within SGL_RS03115 at 266.408 kb on + strand, within SGL_RS03115 at 266.926 kb on + strand, within SGL_RS03120
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 264,459 - +0.3 264,522 - +0.2 264,632 + SGL_RS03105 0.15 -0.3 264,859 + SGL_RS03105 0.44 -0.1 264,918 - SGL_RS03105 0.52 +0.5 264,964 + SGL_RS03105 0.57 -0.0 265,025 - SGL_RS03105 0.65 -0.4 265,229 - +2.1 265,317 - -1.3 265,319 + +1.2 265,326 + -1.3 265,345 + -0.9 265,506 + SGL_RS03110 0.18 +1.2 265,566 + SGL_RS03110 0.29 +1.3 265,715 + SGL_RS03110 0.57 +1.4 265,723 - SGL_RS03110 0.59 -0.9 265,728 - SGL_RS03110 0.60 +0.7 265,827 + SGL_RS03110 0.79 -1.1 265,877 + SGL_RS03110 0.88 -0.3 265,887 + +1.5 265,971 + -2.7 266,005 - -0.1 266,214 - SGL_RS03115 0.36 +0.1 266,408 + SGL_RS03115 0.68 +2.1 266,926 + SGL_RS03120 0.13 -2.4
Or see this region's nucleotide sequence