Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02025

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02020 and SGL_RS02025 are separated by 180 nucleotidesSGL_RS02025 and SGL_RS02030 are separated by 203 nucleotides SGL_RS02020: SGL_RS02020 - AraC family transcriptional regulator, at 38,680 to 39,636 _RS02020 SGL_RS02025: SGL_RS02025 - TonB-dependent receptor, at 39,817 to 42,363 _RS02025 SGL_RS02030: SGL_RS02030 - iron-siderophore ABC transporter substrate-binding protein, at 42,567 to 43,397 _RS02030 Position (kb) 39 40 41 42 43Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 38.818 kb on + strand, within SGL_RS02020at 38.865 kb on + strand, within SGL_RS02020at 38.911 kb on - strand, within SGL_RS02020at 39.057 kb on - strand, within SGL_RS02020at 39.180 kb on + strand, within SGL_RS02020at 39.235 kb on + strand, within SGL_RS02020at 39.235 kb on + strand, within SGL_RS02020at 39.250 kb on - strand, within SGL_RS02020at 39.859 kb on - strandat 39.891 kb on + strandat 39.912 kb on - strandat 39.939 kb on + strandat 39.946 kb on - strandat 39.981 kb on - strandat 40.015 kb on + strandat 40.058 kb on + strandat 40.164 kb on - strand, within SGL_RS02025at 40.221 kb on - strand, within SGL_RS02025at 40.351 kb on + strand, within SGL_RS02025at 40.370 kb on + strand, within SGL_RS02025at 40.409 kb on + strand, within SGL_RS02025at 40.409 kb on - strand, within SGL_RS02025at 40.415 kb on - strand, within SGL_RS02025at 40.443 kb on + strand, within SGL_RS02025at 40.497 kb on + strand, within SGL_RS02025at 40.519 kb on - strand, within SGL_RS02025at 40.545 kb on + strand, within SGL_RS02025at 40.562 kb on + strand, within SGL_RS02025at 40.630 kb on + strand, within SGL_RS02025at 40.630 kb on + strand, within SGL_RS02025at 40.640 kb on + strand, within SGL_RS02025at 40.648 kb on - strand, within SGL_RS02025at 40.699 kb on - strand, within SGL_RS02025at 40.855 kb on - strand, within SGL_RS02025at 40.855 kb on - strand, within SGL_RS02025at 40.855 kb on - strand, within SGL_RS02025at 40.884 kb on - strand, within SGL_RS02025at 41.041 kb on - strand, within SGL_RS02025at 41.199 kb on + strand, within SGL_RS02025at 41.240 kb on + strand, within SGL_RS02025at 41.442 kb on + strand, within SGL_RS02025at 41.531 kb on + strand, within SGL_RS02025at 41.565 kb on - strand, within SGL_RS02025at 41.873 kb on - strand, within SGL_RS02025at 41.930 kb on - strand, within SGL_RS02025at 41.995 kb on + strand, within SGL_RS02025at 42.117 kb on + strandat 42.245 kb on - strandat 42.523 kb on - strandat 42.593 kb on + strandat 42.604 kb on + strandat 42.612 kb on - strandat 42.612 kb on - strandat 42.620 kb on - strandat 42.703 kb on + strand, within SGL_RS02030at 42.711 kb on - strand, within SGL_RS02030at 42.744 kb on + strand, within SGL_RS02030at 42.744 kb on - strand, within SGL_RS02030at 42.825 kb on - strand, within SGL_RS02030at 42.844 kb on + strand, within SGL_RS02030at 42.935 kb on - strand, within SGL_RS02030at 42.960 kb on + strand, within SGL_RS02030at 42.978 kb on - strand, within SGL_RS02030at 42.995 kb on + strand, within SGL_RS02030at 42.995 kb on + strand, within SGL_RS02030at 42.995 kb on + strand, within SGL_RS02030at 43.003 kb on - strand, within SGL_RS02030at 43.003 kb on - strand, within SGL_RS02030at 43.003 kb on - strand, within SGL_RS02030at 43.003 kb on - strand, within SGL_RS02030at 43.003 kb on - strand, within SGL_RS02030at 43.014 kb on - strand, within SGL_RS02030at 43.148 kb on + strand, within SGL_RS02030at 43.148 kb on - strand, within SGL_RS02030at 43.223 kb on - strand, within SGL_RS02030at 43.255 kb on + strand, within SGL_RS02030at 43.304 kb on + strand, within SGL_RS02030at 43.304 kb on + strand, within SGL_RS02030at 43.312 kb on - strand, within SGL_RS02030at 43.312 kb on - strand, within SGL_RS02030at 43.312 kb on - strand, within SGL_RS02030at 43.362 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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38,818 + SGL_RS02020 0.14 +1.4
38,865 + SGL_RS02020 0.19 -2.9
38,911 - SGL_RS02020 0.24 +0.9
39,057 - SGL_RS02020 0.39 +1.6
39,180 + SGL_RS02020 0.52 -2.7
39,235 + SGL_RS02020 0.58 -0.8
39,235 + SGL_RS02020 0.58 +0.9
39,250 - SGL_RS02020 0.60 +0.8
39,859 - -0.3
39,891 + +0.3
39,912 - +0.5
39,939 + +1.8
39,946 - +0.7
39,981 - +0.7
40,015 + -1.0
40,058 + -0.2
40,164 - SGL_RS02025 0.14 -1.7
40,221 - SGL_RS02025 0.16 -0.8
40,351 + SGL_RS02025 0.21 +0.2
40,370 + SGL_RS02025 0.22 +1.1
40,409 + SGL_RS02025 0.23 +1.0
40,409 - SGL_RS02025 0.23 +0.3
40,415 - SGL_RS02025 0.23 -0.7
40,443 + SGL_RS02025 0.25 +0.5
40,497 + SGL_RS02025 0.27 +0.3
40,519 - SGL_RS02025 0.28 +0.3
40,545 + SGL_RS02025 0.29 +0.0
40,562 + SGL_RS02025 0.29 +0.2
40,630 + SGL_RS02025 0.32 +1.6
40,630 + SGL_RS02025 0.32 -0.9
40,640 + SGL_RS02025 0.32 -1.4
40,648 - SGL_RS02025 0.33 +0.2
40,699 - SGL_RS02025 0.35 +1.2
40,855 - SGL_RS02025 0.41 +0.5
40,855 - SGL_RS02025 0.41 -0.0
40,855 - SGL_RS02025 0.41 +0.7
40,884 - SGL_RS02025 0.42 +0.1
41,041 - SGL_RS02025 0.48 -0.4
41,199 + SGL_RS02025 0.54 -1.7
41,240 + SGL_RS02025 0.56 -1.6
41,442 + SGL_RS02025 0.64 +0.1
41,531 + SGL_RS02025 0.67 +0.3
41,565 - SGL_RS02025 0.69 -0.2
41,873 - SGL_RS02025 0.81 +1.0
41,930 - SGL_RS02025 0.83 -1.0
41,995 + SGL_RS02025 0.86 -1.9
42,117 + +0.2
42,245 - -0.8
42,523 - -0.9
42,593 + +1.3
42,604 + -1.4
42,612 - -1.0
42,612 - -0.9
42,620 - +1.1
42,703 + SGL_RS02030 0.16 -0.3
42,711 - SGL_RS02030 0.17 -0.7
42,744 + SGL_RS02030 0.21 +1.7
42,744 - SGL_RS02030 0.21 +0.1
42,825 - SGL_RS02030 0.31 +0.5
42,844 + SGL_RS02030 0.33 +0.2
42,935 - SGL_RS02030 0.44 +0.0
42,960 + SGL_RS02030 0.47 -0.6
42,978 - SGL_RS02030 0.49 +0.2
42,995 + SGL_RS02030 0.52 +0.1
42,995 + SGL_RS02030 0.52 -0.8
42,995 + SGL_RS02030 0.52 -2.4
43,003 - SGL_RS02030 0.52 +1.2
43,003 - SGL_RS02030 0.52 -0.6
43,003 - SGL_RS02030 0.52 +0.8
43,003 - SGL_RS02030 0.52 -1.8
43,003 - SGL_RS02030 0.52 +0.3
43,014 - SGL_RS02030 0.54 +1.7
43,148 + SGL_RS02030 0.70 +0.5
43,148 - SGL_RS02030 0.70 +0.6
43,223 - SGL_RS02030 0.79 -1.1
43,255 + SGL_RS02030 0.83 -0.9
43,304 + SGL_RS02030 0.89 -0.9
43,304 + SGL_RS02030 0.89 +0.5
43,312 - SGL_RS02030 0.90 -1.8
43,312 - SGL_RS02030 0.90 -0.2
43,312 - SGL_RS02030 0.90 +3.0
43,362 - -0.3

Or see this region's nucleotide sequence