Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02010

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02005 and SGL_RS02010 are separated by 76 nucleotidesSGL_RS02010 and SGL_RS02015 are separated by 141 nucleotides SGL_RS02005: SGL_RS02005 - energy transducer TonB, at 33,891 to 35,489 _RS02005 SGL_RS02010: SGL_RS02010 - hypothetical protein, at 35,566 to 36,615 _RS02010 SGL_RS02015: SGL_RS02015 - ABC transporter ATP-binding protein, at 36,757 to 38,538 _RS02015 Position (kb) 35 36 37Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 34.579 kb on - strand, within SGL_RS02005at 34.629 kb on - strand, within SGL_RS02005at 34.736 kb on - strand, within SGL_RS02005at 34.736 kb on - strand, within SGL_RS02005at 34.745 kb on + strand, within SGL_RS02005at 34.745 kb on + strand, within SGL_RS02005at 34.750 kb on + strand, within SGL_RS02005at 34.753 kb on - strand, within SGL_RS02005at 34.789 kb on - strand, within SGL_RS02005at 34.819 kb on + strand, within SGL_RS02005at 34.829 kb on + strand, within SGL_RS02005at 34.859 kb on + strand, within SGL_RS02005at 34.865 kb on + strand, within SGL_RS02005at 34.872 kb on + strand, within SGL_RS02005at 34.893 kb on + strand, within SGL_RS02005at 34.971 kb on + strand, within SGL_RS02005at 34.979 kb on - strand, within SGL_RS02005at 34.979 kb on - strand, within SGL_RS02005at 34.981 kb on + strand, within SGL_RS02005at 35.030 kb on + strand, within SGL_RS02005at 35.054 kb on + strand, within SGL_RS02005at 35.066 kb on + strand, within SGL_RS02005at 35.078 kb on + strand, within SGL_RS02005at 35.078 kb on + strand, within SGL_RS02005at 35.166 kb on + strand, within SGL_RS02005at 35.193 kb on + strand, within SGL_RS02005at 35.297 kb on - strand, within SGL_RS02005at 35.312 kb on + strand, within SGL_RS02005at 35.320 kb on - strand, within SGL_RS02005at 35.353 kb on + strandat 35.353 kb on + strandat 35.356 kb on - strandat 35.361 kb on - strandat 35.361 kb on - strandat 35.379 kb on + strandat 35.464 kb on + strandat 35.472 kb on - strandat 35.648 kb on + strandat 35.648 kb on + strandat 35.656 kb on - strandat 35.846 kb on + strand, within SGL_RS02010at 35.854 kb on - strand, within SGL_RS02010at 35.941 kb on + strand, within SGL_RS02010at 35.946 kb on + strand, within SGL_RS02010at 35.983 kb on + strand, within SGL_RS02010at 35.985 kb on + strand, within SGL_RS02010at 36.051 kb on - strand, within SGL_RS02010at 36.051 kb on - strand, within SGL_RS02010at 36.053 kb on + strand, within SGL_RS02010at 36.053 kb on + strand, within SGL_RS02010at 36.154 kb on - strand, within SGL_RS02010at 36.156 kb on + strand, within SGL_RS02010at 36.156 kb on + strand, within SGL_RS02010at 36.244 kb on - strand, within SGL_RS02010at 36.247 kb on + strand, within SGL_RS02010at 36.247 kb on + strand, within SGL_RS02010at 36.254 kb on - strand, within SGL_RS02010at 36.327 kb on - strand, within SGL_RS02010at 36.484 kb on - strand, within SGL_RS02010at 36.569 kb on + strandat 36.772 kb on - strandat 36.777 kb on + strandat 36.777 kb on + strandat 36.818 kb on + strandat 36.818 kb on + strandat 36.890 kb on + strandat 36.898 kb on - strandat 36.898 kb on - strandat 36.898 kb on - strandat 36.917 kb on + strandat 37.015 kb on + strand, within SGL_RS02015at 37.097 kb on - strand, within SGL_RS02015at 37.140 kb on + strand, within SGL_RS02015at 37.158 kb on - strand, within SGL_RS02015at 37.245 kb on + strand, within SGL_RS02015at 37.257 kb on - strand, within SGL_RS02015at 37.268 kb on - strand, within SGL_RS02015at 37.322 kb on + strand, within SGL_RS02015at 37.354 kb on - strand, within SGL_RS02015at 37.395 kb on + strand, within SGL_RS02015at 37.462 kb on - strand, within SGL_RS02015at 37.499 kb on - strand, within SGL_RS02015at 37.504 kb on + strand, within SGL_RS02015at 37.517 kb on - strand, within SGL_RS02015at 37.547 kb on - strand, within SGL_RS02015at 37.586 kb on - strand, within SGL_RS02015

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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34,579 - SGL_RS02005 0.43 +4.4
34,629 - SGL_RS02005 0.46 +2.7
34,736 - SGL_RS02005 0.53 +4.6
34,736 - SGL_RS02005 0.53 +4.2
34,745 + SGL_RS02005 0.53 +2.3
34,745 + SGL_RS02005 0.53 +2.5
34,750 + SGL_RS02005 0.54 +4.1
34,753 - SGL_RS02005 0.54 +4.1
34,789 - SGL_RS02005 0.56 +5.0
34,819 + SGL_RS02005 0.58 +2.5
34,829 + SGL_RS02005 0.59 +3.9
34,859 + SGL_RS02005 0.61 +4.0
34,865 + SGL_RS02005 0.61 +3.7
34,872 + SGL_RS02005 0.61 +2.6
34,893 + SGL_RS02005 0.63 +1.2
34,971 + SGL_RS02005 0.68 +2.1
34,979 - SGL_RS02005 0.68 +4.1
34,979 - SGL_RS02005 0.68 +3.6
34,981 + SGL_RS02005 0.68 +1.2
35,030 + SGL_RS02005 0.71 +2.8
35,054 + SGL_RS02005 0.73 +1.9
35,066 + SGL_RS02005 0.73 +1.2
35,078 + SGL_RS02005 0.74 +3.0
35,078 + SGL_RS02005 0.74 +3.0
35,166 + SGL_RS02005 0.80 +1.4
35,193 + SGL_RS02005 0.81 -0.1
35,297 - SGL_RS02005 0.88 +3.2
35,312 + SGL_RS02005 0.89 -1.1
35,320 - SGL_RS02005 0.89 +2.1
35,353 + +1.1
35,353 + +2.6
35,356 - +2.9
35,361 - +1.5
35,361 - +1.3
35,379 + +0.4
35,464 + +2.3
35,472 - +1.7
35,648 + +0.0
35,648 + +2.4
35,656 - +0.9
35,846 + SGL_RS02010 0.27 +0.1
35,854 - SGL_RS02010 0.27 +1.5
35,941 + SGL_RS02010 0.36 +0.5
35,946 + SGL_RS02010 0.36 +0.8
35,983 + SGL_RS02010 0.40 +1.1
35,985 + SGL_RS02010 0.40 +2.4
36,051 - SGL_RS02010 0.46 +1.7
36,051 - SGL_RS02010 0.46 +1.4
36,053 + SGL_RS02010 0.46 -1.0
36,053 + SGL_RS02010 0.46 +1.7
36,154 - SGL_RS02010 0.56 +1.7
36,156 + SGL_RS02010 0.56 +1.0
36,156 + SGL_RS02010 0.56 -0.5
36,244 - SGL_RS02010 0.65 +0.4
36,247 + SGL_RS02010 0.65 +1.8
36,247 + SGL_RS02010 0.65 +0.9
36,254 - SGL_RS02010 0.66 +3.1
36,327 - SGL_RS02010 0.72 +2.9
36,484 - SGL_RS02010 0.87 +0.8
36,569 + +1.1
36,772 - -0.1
36,777 + +0.7
36,777 + +0.4
36,818 + -2.4
36,818 + -1.2
36,890 + -0.7
36,898 - +0.6
36,898 - +0.7
36,898 - -1.3
36,917 + -0.5
37,015 + SGL_RS02015 0.14 -0.4
37,097 - SGL_RS02015 0.19 +0.3
37,140 + SGL_RS02015 0.21 +0.3
37,158 - SGL_RS02015 0.23 +0.6
37,245 + SGL_RS02015 0.27 +0.2
37,257 - SGL_RS02015 0.28 -0.1
37,268 - SGL_RS02015 0.29 -1.4
37,322 + SGL_RS02015 0.32 -1.7
37,354 - SGL_RS02015 0.34 +0.6
37,395 + SGL_RS02015 0.36 -0.2
37,462 - SGL_RS02015 0.40 +0.4
37,499 - SGL_RS02015 0.42 -1.8
37,504 + SGL_RS02015 0.42 -0.4
37,517 - SGL_RS02015 0.43 +0.4
37,547 - SGL_RS02015 0.44 +0.4
37,586 - SGL_RS02015 0.47 -2.1

Or see this region's nucleotide sequence