Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS01980 and SGL_RS01985 are separated by 67 nucleotides SGL_RS01985 and SGL_RS01990 are separated by 72 nucleotides SGL_RS01990 and SGL_RS01995 are separated by 69 nucleotides SGL_RS01995 and SGL_RS02000 overlap by 17 nucleotides
SGL_RS01980: SGL_RS01980 - AraC family transcriptional regulator, at 27,990 to 29,030
_RS01980
SGL_RS01985: SGL_RS01985 - class I SAM-dependent methyltransferase, at 29,098 to 29,895
_RS01985
SGL_RS01990: SGL_RS01990 - TonB-dependent siderophore receptor, at 29,968 to 32,454
_RS01990
SGL_RS01995: SGL_RS01995 - biopolymer transporter ExbD, at 32,524 to 32,928
_RS01995
SGL_RS02000: SGL_RS02000 - MotA/TolQ/ExbB proton channel family protein, at 32,912 to 33,544
_RS02000
Position (kb) 29
30
31
32
33 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9
10 at 29.294 kb on + strand, within SGL_RS01985 at 29.507 kb on + strand, within SGL_RS01985 at 29.746 kb on + strand, within SGL_RS01985 at 29.951 kb on - strand at 29.964 kb on - strand at 30.023 kb on - strand at 30.047 kb on + strand at 30.202 kb on + strand at 30.550 kb on + strand, within SGL_RS01990 at 30.550 kb on + strand, within SGL_RS01990 at 30.603 kb on + strand, within SGL_RS01990 at 30.719 kb on + strand, within SGL_RS01990 at 30.832 kb on + strand, within SGL_RS01990 at 31.293 kb on + strand, within SGL_RS01990 at 31.313 kb on + strand, within SGL_RS01990 at 31.313 kb on + strand, within SGL_RS01990 at 31.345 kb on + strand, within SGL_RS01990 at 31.386 kb on + strand, within SGL_RS01990 at 31.638 kb on + strand, within SGL_RS01990 at 31.786 kb on + strand, within SGL_RS01990 at 31.786 kb on - strand, within SGL_RS01990 at 31.787 kb on - strand, within SGL_RS01990 at 31.796 kb on + strand, within SGL_RS01990 at 31.851 kb on - strand, within SGL_RS01990 at 31.873 kb on - strand, within SGL_RS01990 at 31.879 kb on - strand, within SGL_RS01990 at 31.899 kb on - strand, within SGL_RS01990 at 31.939 kb on + strand, within SGL_RS01990 at 31.993 kb on + strand, within SGL_RS01990 at 32.013 kb on + strand, within SGL_RS01990 at 32.013 kb on + strand, within SGL_RS01990 at 32.182 kb on + strand, within SGL_RS01990 at 32.182 kb on + strand, within SGL_RS01990 at 32.202 kb on + strand, within SGL_RS01990 at 32.210 kb on - strand at 32.228 kb on + strand at 32.233 kb on + strand at 32.236 kb on - strand at 32.277 kb on + strand at 32.292 kb on - strand at 32.386 kb on + strand at 32.419 kb on + strand at 32.431 kb on + strand at 32.571 kb on + strand, within SGL_RS01995 at 32.704 kb on - strand, within SGL_RS01995 at 32.903 kb on + strand at 32.911 kb on - strand at 33.016 kb on + strand, within SGL_RS02000 at 33.039 kb on + strand, within SGL_RS02000 at 33.044 kb on + strand, within SGL_RS02000 at 33.071 kb on + strand, within SGL_RS02000 at 33.071 kb on + strand, within SGL_RS02000 at 33.086 kb on + strand, within SGL_RS02000 at 33.151 kb on - strand, within SGL_RS02000 at 33.361 kb on - strand, within SGL_RS02000
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 29,294 + SGL_RS01985 0.25 +0.3 29,507 + SGL_RS01985 0.51 +0.1 29,746 + SGL_RS01985 0.81 -0.1 29,951 - +4.6 29,964 - +4.0 30,023 - +6.3 30,047 + +5.0 30,202 + +8.1 30,550 + SGL_RS01990 0.23 +8.8 30,550 + SGL_RS01990 0.23 +8.0 30,603 + SGL_RS01990 0.26 +8.5 30,719 + SGL_RS01990 0.30 +8.2 30,832 + SGL_RS01990 0.35 +7.6 31,293 + SGL_RS01990 0.53 +8.3 31,313 + SGL_RS01990 0.54 +7.4 31,313 + SGL_RS01990 0.54 +8.6 31,345 + SGL_RS01990 0.55 +9.1 31,386 + SGL_RS01990 0.57 +7.7 31,638 + SGL_RS01990 0.67 +7.6 31,786 + SGL_RS01990 0.73 +8.1 31,786 - SGL_RS01990 0.73 +8.2 31,787 - SGL_RS01990 0.73 +9.2 31,796 + SGL_RS01990 0.74 +7.8 31,851 - SGL_RS01990 0.76 +7.0 31,873 - SGL_RS01990 0.77 +8.1 31,879 - SGL_RS01990 0.77 +7.3 31,899 - SGL_RS01990 0.78 +8.1 31,939 + SGL_RS01990 0.79 +8.4 31,993 + SGL_RS01990 0.81 +8.6 32,013 + SGL_RS01990 0.82 +7.5 32,013 + SGL_RS01990 0.82 +7.6 32,182 + SGL_RS01990 0.89 +8.4 32,182 + SGL_RS01990 0.89 +8.7 32,202 + SGL_RS01990 0.90 +8.4 32,210 - +7.5 32,228 + +7.8 32,233 + +8.6 32,236 - +8.5 32,277 + +8.7 32,292 - +7.1 32,386 + +8.5 32,419 + +8.5 32,431 + +8.3 32,571 + SGL_RS01995 0.12 +9.6 32,704 - SGL_RS01995 0.44 +9.0 32,903 + +8.8 32,911 - +9.1 33,016 + SGL_RS02000 0.16 +9.3 33,039 + SGL_RS02000 0.20 +9.5 33,044 + SGL_RS02000 0.21 +9.1 33,071 + SGL_RS02000 0.25 +9.5 33,071 + SGL_RS02000 0.25 +9.6 33,086 + SGL_RS02000 0.27 +9.5 33,151 - SGL_RS02000 0.38 +8.9 33,361 - SGL_RS02000 0.71 +10.1
Or see this region's nucleotide sequence