Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS00190

Experiment: medium light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS00180 and SGL_RS00185 are separated by 21 nucleotidesSGL_RS00185 and SGL_RS00190 are separated by 151 nucleotidesSGL_RS00190 and SGL_RS00195 are separated by 94 nucleotides SGL_RS00180: SGL_RS00180 - IS5 family transposase, at 38,907 to 39,641 _RS00180 SGL_RS00185: SGL_RS00185 - transposase, at 39,663 to 40,259 _RS00185 SGL_RS00190: SGL_RS00190 - sulfotransferase, at 40,411 to 41,316 _RS00190 SGL_RS00195: SGL_RS00195 - glycosyltransferase family 2 protein, at 41,411 to 42,397 _RS00195 Position (kb) 40 41 42Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 39.666 kb on + strandat 39.719 kb on - strandat 39.783 kb on + strand, within SGL_RS00185at 39.783 kb on + strand, within SGL_RS00185at 39.791 kb on - strand, within SGL_RS00185at 39.791 kb on - strand, within SGL_RS00185at 39.791 kb on - strand, within SGL_RS00185at 39.835 kb on - strand, within SGL_RS00185at 39.856 kb on + strand, within SGL_RS00185at 39.859 kb on - strand, within SGL_RS00185at 39.864 kb on - strand, within SGL_RS00185at 39.872 kb on - strand, within SGL_RS00185at 40.198 kb on - strand, within SGL_RS00185at 40.365 kb on - strandat 40.424 kb on + strandat 40.482 kb on + strandat 40.483 kb on - strandat 40.509 kb on - strand, within SGL_RS00190at 40.516 kb on + strand, within SGL_RS00190at 40.649 kb on - strand, within SGL_RS00190at 40.779 kb on - strand, within SGL_RS00190at 40.789 kb on - strand, within SGL_RS00190at 40.832 kb on + strand, within SGL_RS00190at 41.013 kb on + strand, within SGL_RS00190at 41.042 kb on + strand, within SGL_RS00190at 41.046 kb on + strand, within SGL_RS00190at 41.083 kb on - strand, within SGL_RS00190at 41.111 kb on - strand, within SGL_RS00190at 41.392 kb on + strandat 41.533 kb on + strand, within SGL_RS00195at 41.608 kb on + strand, within SGL_RS00195at 41.608 kb on + strand, within SGL_RS00195at 41.616 kb on - strand, within SGL_RS00195at 41.616 kb on - strand, within SGL_RS00195at 41.616 kb on - strand, within SGL_RS00195at 41.627 kb on - strand, within SGL_RS00195at 41.629 kb on + strand, within SGL_RS00195at 41.637 kb on - strand, within SGL_RS00195at 41.656 kb on - strand, within SGL_RS00195at 41.698 kb on - strand, within SGL_RS00195at 41.878 kb on - strand, within SGL_RS00195at 42.008 kb on - strand, within SGL_RS00195at 42.180 kb on - strand, within SGL_RS00195

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Per-strain Table

Position Strand Gene LocusTag Fraction medium light; bubbling
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39,666 + -2.2
39,719 - -2.0
39,783 + SGL_RS00185 0.20 -0.3
39,783 + SGL_RS00185 0.20 +0.3
39,791 - SGL_RS00185 0.21 -0.3
39,791 - SGL_RS00185 0.21 +0.1
39,791 - SGL_RS00185 0.21 -1.9
39,835 - SGL_RS00185 0.29 +0.5
39,856 + SGL_RS00185 0.32 -2.1
39,859 - SGL_RS00185 0.33 +0.6
39,864 - SGL_RS00185 0.34 +5.6
39,872 - SGL_RS00185 0.35 -0.8
40,198 - SGL_RS00185 0.90 -2.2
40,365 - +0.7
40,424 + +0.5
40,482 + -1.9
40,483 - -1.8
40,509 - SGL_RS00190 0.11 -3.5
40,516 + SGL_RS00190 0.12 +0.2
40,649 - SGL_RS00190 0.26 -5.1
40,779 - SGL_RS00190 0.41 -4.6
40,789 - SGL_RS00190 0.42 -5.7
40,832 + SGL_RS00190 0.46 -2.8
41,013 + SGL_RS00190 0.66 -4.2
41,042 + SGL_RS00190 0.70 -4.7
41,046 + SGL_RS00190 0.70 -3.9
41,083 - SGL_RS00190 0.74 -5.1
41,111 - SGL_RS00190 0.77 -4.2
41,392 + +2.1
41,533 + SGL_RS00195 0.12 -4.2
41,608 + SGL_RS00195 0.20 -3.7
41,608 + SGL_RS00195 0.20 -2.6
41,616 - SGL_RS00195 0.21 -2.6
41,616 - SGL_RS00195 0.21 -3.7
41,616 - SGL_RS00195 0.21 -4.3
41,627 - SGL_RS00195 0.22 -4.0
41,629 + SGL_RS00195 0.22 +1.4
41,637 - SGL_RS00195 0.23 -4.7
41,656 - SGL_RS00195 0.25 -1.2
41,698 - SGL_RS00195 0.29 -1.6
41,878 - SGL_RS00195 0.47 -4.6
42,008 - SGL_RS00195 0.60 -4.6
42,180 - SGL_RS00195 0.78 -4.4

Or see this region's nucleotide sequence