Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11040

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11035 and SGL_RS11040 are separated by 118 nucleotidesSGL_RS11040 and SGL_RS11045 are separated by 202 nucleotidesSGL_RS11045 and SGL_RS11050 are separated by 26 nucleotides SGL_RS11035: SGL_RS11035 - LapA family protein, at 1,937,474 to 1,938,310 _RS11035 SGL_RS11040: SGL_RS11040 - TMEM165/GDT1 family protein, at 1,938,429 to 1,938,782 _RS11040 SGL_RS11045: SGL_RS11045 - glutathione peroxidase, at 1,938,985 to 1,939,494 _RS11045 SGL_RS11050: SGL_RS11050 - DUF3493 domain-containing protein, at 1,939,521 to 1,939,781 _RS11050 Position (kb) 1938 1939Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1937.474 kb on + strandat 1937.641 kb on + strand, within SGL_RS11035at 1937.902 kb on - strand, within SGL_RS11035at 1937.978 kb on + strand, within SGL_RS11035at 1938.415 kb on + strandat 1938.572 kb on + strand, within SGL_RS11040at 1938.595 kb on - strand, within SGL_RS11040at 1938.647 kb on - strand, within SGL_RS11040at 1938.659 kb on + strand, within SGL_RS11040at 1939.124 kb on + strand, within SGL_RS11045at 1939.174 kb on - strand, within SGL_RS11045at 1939.558 kb on - strand, within SGL_RS11050at 1939.558 kb on - strand, within SGL_RS11050

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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1,937,474 + -0.1
1,937,641 + SGL_RS11035 0.20 -4.6
1,937,902 - SGL_RS11035 0.51 -2.4
1,937,978 + SGL_RS11035 0.60 -0.4
1,938,415 + +0.2
1,938,572 + SGL_RS11040 0.40 -5.2
1,938,595 - SGL_RS11040 0.47 -3.6
1,938,647 - SGL_RS11040 0.62 -3.7
1,938,659 + SGL_RS11040 0.65 -3.7
1,939,124 + SGL_RS11045 0.27 -0.5
1,939,174 - SGL_RS11045 0.37 +0.1
1,939,558 - SGL_RS11050 0.14 -0.2
1,939,558 - SGL_RS11050 0.14 +1.9

Or see this region's nucleotide sequence