Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS00315 and SGL_RS00320 are separated by 663 nucleotides SGL_RS00320 and SGL_RS19365 are separated by 153 nucleotides SGL_RS19365 and SGL_RS00330 are separated by 186 nucleotides
SGL_RS00315: SGL_RS00315 - hypothetical protein, at 69,335 to 70,810
_RS00315
SGL_RS00320: SGL_RS00320 - helix-turn-helix transcriptional regulator, at 71,474 to 71,818
_RS00320
SGL_RS19365: SGL_RS19365 - hypothetical protein, at 71,972 to 72,238
_RS19365
SGL_RS00330: SGL_RS00330 - hypothetical protein, at 72,425 to 73,159
_RS00330
Position (kb) 71
72 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 70.882 kb on + strand at 71.536 kb on - strand, within SGL_RS00320 at 71.571 kb on - strand, within SGL_RS00320 at 71.651 kb on - strand, within SGL_RS00320 at 71.766 kb on + strand, within SGL_RS00320 at 71.774 kb on - strand, within SGL_RS00320 at 71.855 kb on - strand at 71.855 kb on - strand at 71.939 kb on + strand at 72.181 kb on - strand, within SGL_RS19365 at 72.215 kb on + strand at 72.229 kb on - strand at 72.284 kb on + strand at 72.333 kb on + strand at 72.341 kb on - strand at 72.452 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 70,882 + -0.2 71,536 - SGL_RS00320 0.18 -3.7 71,571 - SGL_RS00320 0.28 -2.1 71,651 - SGL_RS00320 0.51 -6.2 71,766 + SGL_RS00320 0.85 -3.3 71,774 - SGL_RS00320 0.87 -5.1 71,855 - -0.5 71,855 - +0.2 71,939 + -0.6 72,181 - SGL_RS19365 0.78 +0.4 72,215 + +0.9 72,229 - -0.4 72,284 + +0.0 72,333 + +0.2 72,341 - +0.1 72,452 - -0.1
Or see this region's nucleotide sequence