Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16080

Experiment: Zinc 20 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16075 and SGL_RS16080 are separated by 65 nucleotidesSGL_RS16080 and SGL_RS16085 are separated by 81 nucleotides SGL_RS16075: SGL_RS16075 - MFS transporter, at 3,055,814 to 3,057,151 _RS16075 SGL_RS16080: SGL_RS16080 - precorrin-8X methylmutase, at 3,057,217 to 3,058,329 _RS16080 SGL_RS16085: SGL_RS16085 - heavy metal translocating P-type ATPase, at 3,058,411 to 3,060,339 _RS16085 Position (kb) 3057 3058 3059Strain fitness (log2 ratio) -1 0 1at 3056.240 kb on + strand, within SGL_RS16075at 3056.240 kb on + strand, within SGL_RS16075at 3056.248 kb on - strand, within SGL_RS16075at 3056.248 kb on - strand, within SGL_RS16075at 3056.294 kb on - strand, within SGL_RS16075at 3056.298 kb on - strand, within SGL_RS16075at 3056.418 kb on - strand, within SGL_RS16075at 3056.428 kb on - strand, within SGL_RS16075at 3056.529 kb on - strand, within SGL_RS16075at 3056.582 kb on - strand, within SGL_RS16075at 3056.653 kb on + strand, within SGL_RS16075at 3056.713 kb on - strand, within SGL_RS16075at 3056.713 kb on - strand, within SGL_RS16075at 3056.713 kb on - strand, within SGL_RS16075at 3056.716 kb on - strand, within SGL_RS16075at 3056.739 kb on - strand, within SGL_RS16075at 3056.794 kb on - strand, within SGL_RS16075at 3056.810 kb on + strand, within SGL_RS16075at 3056.811 kb on + strand, within SGL_RS16075at 3056.917 kb on - strand, within SGL_RS16075at 3056.931 kb on - strand, within SGL_RS16075at 3056.967 kb on + strand, within SGL_RS16075at 3056.982 kb on + strand, within SGL_RS16075at 3056.987 kb on + strand, within SGL_RS16075at 3057.014 kb on + strand, within SGL_RS16075at 3057.076 kb on + strandat 3057.087 kb on + strandat 3057.145 kb on + strandat 3057.316 kb on + strandat 3057.324 kb on - strandat 3057.344 kb on - strand, within SGL_RS16080at 3057.423 kb on + strand, within SGL_RS16080at 3057.451 kb on + strand, within SGL_RS16080at 3057.456 kb on + strand, within SGL_RS16080at 3057.465 kb on + strand, within SGL_RS16080at 3057.465 kb on + strand, within SGL_RS16080at 3057.532 kb on - strand, within SGL_RS16080at 3057.549 kb on - strand, within SGL_RS16080at 3057.554 kb on + strand, within SGL_RS16080at 3057.561 kb on + strand, within SGL_RS16080at 3057.561 kb on + strand, within SGL_RS16080at 3057.564 kb on - strand, within SGL_RS16080at 3057.564 kb on - strand, within SGL_RS16080at 3057.612 kb on - strand, within SGL_RS16080at 3057.708 kb on - strand, within SGL_RS16080at 3057.744 kb on + strand, within SGL_RS16080at 3057.749 kb on + strand, within SGL_RS16080at 3057.754 kb on + strand, within SGL_RS16080at 3057.767 kb on - strand, within SGL_RS16080at 3057.862 kb on - strand, within SGL_RS16080at 3057.897 kb on + strand, within SGL_RS16080at 3057.897 kb on + strand, within SGL_RS16080at 3057.905 kb on - strand, within SGL_RS16080at 3057.906 kb on - strand, within SGL_RS16080at 3057.993 kb on - strand, within SGL_RS16080at 3058.010 kb on + strand, within SGL_RS16080at 3058.086 kb on - strand, within SGL_RS16080at 3058.100 kb on - strand, within SGL_RS16080at 3058.190 kb on + strand, within SGL_RS16080at 3058.190 kb on + strand, within SGL_RS16080at 3058.198 kb on - strand, within SGL_RS16080at 3058.216 kb on + strand, within SGL_RS16080at 3058.231 kb on + strandat 3058.277 kb on + strandat 3058.283 kb on - strandat 3058.332 kb on - strandat 3058.414 kb on + strandat 3058.433 kb on - strandat 3058.525 kb on - strandat 3058.546 kb on - strandat 3058.682 kb on + strand, within SGL_RS16085at 3058.711 kb on - strand, within SGL_RS16085at 3058.711 kb on - strand, within SGL_RS16085at 3058.777 kb on + strand, within SGL_RS16085at 3058.950 kb on + strand, within SGL_RS16085at 3058.958 kb on - strand, within SGL_RS16085at 3058.986 kb on + strand, within SGL_RS16085at 3058.986 kb on + strand, within SGL_RS16085at 3058.994 kb on - strand, within SGL_RS16085at 3058.994 kb on - strand, within SGL_RS16085at 3058.994 kb on - strand, within SGL_RS16085at 3059.035 kb on + strand, within SGL_RS16085at 3059.043 kb on - strand, within SGL_RS16085at 3059.056 kb on - strand, within SGL_RS16085at 3059.058 kb on + strand, within SGL_RS16085at 3059.058 kb on + strand, within SGL_RS16085at 3059.067 kb on + strand, within SGL_RS16085at 3059.213 kb on + strand, within SGL_RS16085at 3059.251 kb on - strand, within SGL_RS16085

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 20 uM
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3,056,240 + SGL_RS16075 0.32 +0.2
3,056,240 + SGL_RS16075 0.32 +0.0
3,056,248 - SGL_RS16075 0.32 +0.2
3,056,248 - SGL_RS16075 0.32 -0.2
3,056,294 - SGL_RS16075 0.36 +0.0
3,056,298 - SGL_RS16075 0.36 +0.4
3,056,418 - SGL_RS16075 0.45 +0.2
3,056,428 - SGL_RS16075 0.46 -0.1
3,056,529 - SGL_RS16075 0.53 +0.3
3,056,582 - SGL_RS16075 0.57 +0.5
3,056,653 + SGL_RS16075 0.63 -0.1
3,056,713 - SGL_RS16075 0.67 -0.1
3,056,713 - SGL_RS16075 0.67 -0.1
3,056,713 - SGL_RS16075 0.67 +0.4
3,056,716 - SGL_RS16075 0.67 -0.8
3,056,739 - SGL_RS16075 0.69 +0.1
3,056,794 - SGL_RS16075 0.73 +0.2
3,056,810 + SGL_RS16075 0.74 +0.1
3,056,811 + SGL_RS16075 0.75 +0.8
3,056,917 - SGL_RS16075 0.82 +1.1
3,056,931 - SGL_RS16075 0.83 +0.2
3,056,967 + SGL_RS16075 0.86 +0.3
3,056,982 + SGL_RS16075 0.87 -0.2
3,056,987 + SGL_RS16075 0.88 +0.4
3,057,014 + SGL_RS16075 0.90 +0.2
3,057,076 + +0.0
3,057,087 + -0.7
3,057,145 + +0.8
3,057,316 + -0.0
3,057,324 - +1.2
3,057,344 - SGL_RS16080 0.11 +0.0
3,057,423 + SGL_RS16080 0.19 +0.3
3,057,451 + SGL_RS16080 0.21 +0.3
3,057,456 + SGL_RS16080 0.21 +0.3
3,057,465 + SGL_RS16080 0.22 +0.4
3,057,465 + SGL_RS16080 0.22 +0.6
3,057,532 - SGL_RS16080 0.28 +0.5
3,057,549 - SGL_RS16080 0.30 +0.6
3,057,554 + SGL_RS16080 0.30 +0.4
3,057,561 + SGL_RS16080 0.31 +0.7
3,057,561 + SGL_RS16080 0.31 +0.6
3,057,564 - SGL_RS16080 0.31 +0.4
3,057,564 - SGL_RS16080 0.31 +0.4
3,057,612 - SGL_RS16080 0.35 +0.0
3,057,708 - SGL_RS16080 0.44 +0.1
3,057,744 + SGL_RS16080 0.47 +0.5
3,057,749 + SGL_RS16080 0.48 +0.4
3,057,754 + SGL_RS16080 0.48 +0.6
3,057,767 - SGL_RS16080 0.49 +0.4
3,057,862 - SGL_RS16080 0.58 +0.0
3,057,897 + SGL_RS16080 0.61 +0.2
3,057,897 + SGL_RS16080 0.61 +0.2
3,057,905 - SGL_RS16080 0.62 +0.0
3,057,906 - SGL_RS16080 0.62 +0.3
3,057,993 - SGL_RS16080 0.70 -0.1
3,058,010 + SGL_RS16080 0.71 +0.6
3,058,086 - SGL_RS16080 0.78 +0.5
3,058,100 - SGL_RS16080 0.79 +0.5
3,058,190 + SGL_RS16080 0.87 +0.6
3,058,190 + SGL_RS16080 0.87 +0.1
3,058,198 - SGL_RS16080 0.88 +0.3
3,058,216 + SGL_RS16080 0.90 +1.0
3,058,231 + +0.5
3,058,277 + +0.4
3,058,283 - +0.2
3,058,332 - +0.4
3,058,414 + +0.5
3,058,433 - +0.5
3,058,525 - +0.5
3,058,546 - +0.6
3,058,682 + SGL_RS16085 0.14 +0.0
3,058,711 - SGL_RS16085 0.16 +0.8
3,058,711 - SGL_RS16085 0.16 +0.0
3,058,777 + SGL_RS16085 0.19 +0.1
3,058,950 + SGL_RS16085 0.28 +0.2
3,058,958 - SGL_RS16085 0.28 +0.4
3,058,986 + SGL_RS16085 0.30 +0.3
3,058,986 + SGL_RS16085 0.30 +1.1
3,058,994 - SGL_RS16085 0.30 +0.4
3,058,994 - SGL_RS16085 0.30 +0.1
3,058,994 - SGL_RS16085 0.30 +0.4
3,059,035 + SGL_RS16085 0.32 +0.4
3,059,043 - SGL_RS16085 0.33 +0.2
3,059,056 - SGL_RS16085 0.33 +0.4
3,059,058 + SGL_RS16085 0.34 +0.6
3,059,058 + SGL_RS16085 0.34 +1.0
3,059,067 + SGL_RS16085 0.34 +0.5
3,059,213 + SGL_RS16085 0.42 +0.4
3,059,251 - SGL_RS16085 0.44 +0.1

Or see this region's nucleotide sequence