Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17520

Experiment: Zinc 15 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS17510 and SGL_RS17515 are separated by 42 nucleotidesSGL_RS17515 and SGL_RS17520 are separated by 283 nucleotidesSGL_RS17520 and SGL_RS17530 are separated by 228 nucleotidesSGL_RS17530 and SGL_RS17535 are separated by 68 nucleotides SGL_RS17510: SGL_RS17510 - hypothetical protein, at 3,385,642 to 3,385,962 _RS17510 SGL_RS17515: SGL_RS17515 - SMC-Scp complex subunit ScpB, at 3,386,005 to 3,386,493 _RS17515 SGL_RS17520: SGL_RS17520 - DUF3352 domain-containing protein, at 3,386,777 to 3,388,465 _RS17520 SGL_RS17530: SGL_RS17530 - DUF2231 domain-containing protein, at 3,388,694 to 3,389,326 _RS17530 SGL_RS17535: SGL_RS17535 - DUF2231 domain-containing protein, at 3,389,395 to 3,389,883 _RS17535 Position (kb) 3386 3387 3388 3389Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3385.821 kb on + strand, within SGL_RS17510at 3385.917 kb on + strand, within SGL_RS17510at 3386.029 kb on - strandat 3386.091 kb on + strand, within SGL_RS17515at 3386.091 kb on + strand, within SGL_RS17515at 3386.110 kb on - strand, within SGL_RS17515at 3386.133 kb on + strand, within SGL_RS17515at 3386.267 kb on - strand, within SGL_RS17515at 3386.743 kb on + strandat 3387.227 kb on - strand, within SGL_RS17520at 3387.257 kb on - strand, within SGL_RS17520at 3387.355 kb on - strand, within SGL_RS17520at 3387.370 kb on + strand, within SGL_RS17520at 3387.448 kb on + strand, within SGL_RS17520at 3387.636 kb on - strand, within SGL_RS17520at 3387.637 kb on + strand, within SGL_RS17520at 3387.871 kb on - strand, within SGL_RS17520at 3387.930 kb on + strand, within SGL_RS17520at 3388.065 kb on + strand, within SGL_RS17520at 3388.089 kb on + strand, within SGL_RS17520at 3388.100 kb on - strand, within SGL_RS17520at 3388.119 kb on - strand, within SGL_RS17520at 3388.504 kb on + strandat 3388.504 kb on + strandat 3388.528 kb on + strandat 3388.528 kb on + strandat 3388.528 kb on + strandat 3388.536 kb on - strandat 3388.598 kb on + strandat 3388.649 kb on + strandat 3388.667 kb on - strandat 3388.759 kb on - strand, within SGL_RS17530at 3388.761 kb on + strand, within SGL_RS17530at 3388.790 kb on + strand, within SGL_RS17530at 3388.800 kb on - strand, within SGL_RS17530at 3389.002 kb on - strand, within SGL_RS17530at 3389.091 kb on + strand, within SGL_RS17530at 3389.096 kb on + strand, within SGL_RS17530at 3389.099 kb on - strand, within SGL_RS17530at 3389.104 kb on - strand, within SGL_RS17530at 3389.266 kb on + strandat 3389.274 kb on - strandat 3389.328 kb on - strandat 3389.400 kb on + strandat 3389.436 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 15 uM
remove
3,385,821 + SGL_RS17510 0.56 -0.2
3,385,917 + SGL_RS17510 0.86 -0.2
3,386,029 - -1.5
3,386,091 + SGL_RS17515 0.18 -1.7
3,386,091 + SGL_RS17515 0.18 -1.7
3,386,110 - SGL_RS17515 0.21 -1.4
3,386,133 + SGL_RS17515 0.26 -0.1
3,386,267 - SGL_RS17515 0.54 -1.4
3,386,743 + -2.2
3,387,227 - SGL_RS17520 0.27 -1.7
3,387,257 - SGL_RS17520 0.28 -0.1
3,387,355 - SGL_RS17520 0.34 -3.1
3,387,370 + SGL_RS17520 0.35 -1.1
3,387,448 + SGL_RS17520 0.40 -3.2
3,387,636 - SGL_RS17520 0.51 -3.4
3,387,637 + SGL_RS17520 0.51 -5.5
3,387,871 - SGL_RS17520 0.65 -2.7
3,387,930 + SGL_RS17520 0.68 -2.9
3,388,065 + SGL_RS17520 0.76 -2.4
3,388,089 + SGL_RS17520 0.78 -3.2
3,388,100 - SGL_RS17520 0.78 -3.5
3,388,119 - SGL_RS17520 0.79 -2.7
3,388,504 + +0.1
3,388,504 + +0.9
3,388,528 + +0.4
3,388,528 + +0.0
3,388,528 + -0.7
3,388,536 - -0.1
3,388,598 + -0.5
3,388,649 + +0.2
3,388,667 - +0.4
3,388,759 - SGL_RS17530 0.10 -1.7
3,388,761 + SGL_RS17530 0.11 +0.2
3,388,790 + SGL_RS17530 0.15 -0.0
3,388,800 - SGL_RS17530 0.17 -0.5
3,389,002 - SGL_RS17530 0.49 +0.2
3,389,091 + SGL_RS17530 0.63 +0.4
3,389,096 + SGL_RS17530 0.64 +0.2
3,389,099 - SGL_RS17530 0.64 +0.4
3,389,104 - SGL_RS17530 0.65 +0.2
3,389,266 + -0.2
3,389,274 - +0.3
3,389,328 - -0.1
3,389,400 + +0.1
3,389,436 + -0.1

Or see this region's nucleotide sequence