Experiment: Zinc 15 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17460 and SGL_RS17465 are separated by 280 nucleotides SGL_RS17465 and SGL_RS17470 overlap by 33 nucleotides SGL_RS17470 and SGL_RS17475 are separated by 51 nucleotides
SGL_RS17460: SGL_RS17460 - hypothetical protein, at 3,375,291 to 3,377,588
_RS17460
SGL_RS17465: SGL_RS17465 - hypothetical protein, at 3,377,869 to 3,378,279
_RS17465
SGL_RS17470: SGL_RS17470 - nickel pincer cofactor biosynthesis protein LarB, at 3,378,247 to 3,379,050
_RS17470
SGL_RS17475: SGL_RS17475 - M23 family metallopeptidase, at 3,379,102 to 3,379,767
_RS17475
Position (kb)
3378
3379
3380 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3377.508 kb on + strand at 3377.508 kb on + strand at 3377.513 kb on + strand at 3377.788 kb on + strand at 3377.796 kb on + strand at 3377.890 kb on + strand at 3377.903 kb on - strand at 3377.929 kb on + strand, within SGL_RS17465 at 3377.929 kb on + strand, within SGL_RS17465 at 3378.012 kb on + strand, within SGL_RS17465 at 3378.043 kb on - strand, within SGL_RS17465 at 3378.054 kb on - strand, within SGL_RS17465 at 3378.066 kb on + strand, within SGL_RS17465 at 3378.098 kb on - strand, within SGL_RS17465 at 3378.166 kb on + strand, within SGL_RS17465 at 3378.208 kb on + strand, within SGL_RS17465 at 3378.224 kb on - strand, within SGL_RS17465 at 3378.366 kb on + strand, within SGL_RS17470 at 3378.392 kb on + strand, within SGL_RS17470 at 3378.453 kb on + strand, within SGL_RS17470 at 3378.470 kb on + strand, within SGL_RS17470 at 3378.587 kb on + strand, within SGL_RS17470 at 3378.618 kb on + strand, within SGL_RS17470 at 3378.626 kb on - strand, within SGL_RS17470 at 3378.833 kb on + strand, within SGL_RS17470 at 3378.841 kb on - strand, within SGL_RS17470 at 3378.965 kb on + strand, within SGL_RS17470 at 3379.021 kb on + strand at 3379.114 kb on + strand at 3379.122 kb on - strand at 3379.170 kb on + strand, within SGL_RS17475 at 3379.180 kb on - strand, within SGL_RS17475 at 3379.300 kb on + strand, within SGL_RS17475 at 3379.331 kb on + strand, within SGL_RS17475 at 3379.438 kb on + strand, within SGL_RS17475 at 3379.482 kb on + strand, within SGL_RS17475 at 3379.573 kb on - strand, within SGL_RS17475 at 3379.621 kb on + strand, within SGL_RS17475 at 3379.633 kb on + strand, within SGL_RS17475 at 3379.640 kb on - strand, within SGL_RS17475 at 3379.641 kb on - strand, within SGL_RS17475 at 3379.649 kb on + strand, within SGL_RS17475 at 3379.802 kb on - strand at 3379.856 kb on + strand at 3379.900 kb on + strand at 3380.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc 15 uM remove 3,377,508 + +0.0 3,377,508 + +0.3 3,377,513 + +0.1 3,377,788 + +0.1 3,377,796 + -0.2 3,377,890 + -0.3 3,377,903 - -1.8 3,377,929 + SGL_RS17465 0.15 -0.6 3,377,929 + SGL_RS17465 0.15 -0.6 3,378,012 + SGL_RS17465 0.35 +0.1 3,378,043 - SGL_RS17465 0.42 -0.7 3,378,054 - SGL_RS17465 0.45 +0.0 3,378,066 + SGL_RS17465 0.48 -0.8 3,378,098 - SGL_RS17465 0.56 -0.3 3,378,166 + SGL_RS17465 0.72 -0.3 3,378,208 + SGL_RS17465 0.82 -0.5 3,378,224 - SGL_RS17465 0.86 -0.3 3,378,366 + SGL_RS17470 0.15 -3.8 3,378,392 + SGL_RS17470 0.18 -2.7 3,378,453 + SGL_RS17470 0.26 -4.1 3,378,470 + SGL_RS17470 0.28 -2.5 3,378,587 + SGL_RS17470 0.42 -4.1 3,378,618 + SGL_RS17470 0.46 -3.2 3,378,626 - SGL_RS17470 0.47 -3.2 3,378,833 + SGL_RS17470 0.73 -0.1 3,378,841 - SGL_RS17470 0.74 -2.4 3,378,965 + SGL_RS17470 0.89 -1.1 3,379,021 + -3.2 3,379,114 + +0.6 3,379,122 - -0.0 3,379,170 + SGL_RS17475 0.10 -0.2 3,379,180 - SGL_RS17475 0.12 +0.8 3,379,300 + SGL_RS17475 0.30 +0.4 3,379,331 + SGL_RS17475 0.34 +1.6 3,379,438 + SGL_RS17475 0.50 -0.1 3,379,482 + SGL_RS17475 0.57 +0.5 3,379,573 - SGL_RS17475 0.71 -0.1 3,379,621 + SGL_RS17475 0.78 -0.1 3,379,633 + SGL_RS17475 0.80 +0.4 3,379,640 - SGL_RS17475 0.81 +0.3 3,379,641 - SGL_RS17475 0.81 +0.6 3,379,649 + SGL_RS17475 0.82 +0.1 3,379,802 - +0.2 3,379,856 + +0.1 3,379,900 + -0.1 3,380,007 - +0.2
Or see this region's nucleotide sequence