Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17470

Experiment: Zinc 15 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17460 and SGL_RS17465 are separated by 280 nucleotidesSGL_RS17465 and SGL_RS17470 overlap by 33 nucleotidesSGL_RS17470 and SGL_RS17475 are separated by 51 nucleotides SGL_RS17460: SGL_RS17460 - hypothetical protein, at 3,375,291 to 3,377,588 _RS17460 SGL_RS17465: SGL_RS17465 - hypothetical protein, at 3,377,869 to 3,378,279 _RS17465 SGL_RS17470: SGL_RS17470 - nickel pincer cofactor biosynthesis protein LarB, at 3,378,247 to 3,379,050 _RS17470 SGL_RS17475: SGL_RS17475 - M23 family metallopeptidase, at 3,379,102 to 3,379,767 _RS17475 Position (kb) 3378 3379 3380Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3377.508 kb on + strandat 3377.508 kb on + strandat 3377.513 kb on + strandat 3377.788 kb on + strandat 3377.796 kb on + strandat 3377.890 kb on + strandat 3377.903 kb on - strandat 3377.929 kb on + strand, within SGL_RS17465at 3377.929 kb on + strand, within SGL_RS17465at 3378.012 kb on + strand, within SGL_RS17465at 3378.043 kb on - strand, within SGL_RS17465at 3378.054 kb on - strand, within SGL_RS17465at 3378.066 kb on + strand, within SGL_RS17465at 3378.098 kb on - strand, within SGL_RS17465at 3378.166 kb on + strand, within SGL_RS17465at 3378.208 kb on + strand, within SGL_RS17465at 3378.224 kb on - strand, within SGL_RS17465at 3378.366 kb on + strand, within SGL_RS17470at 3378.392 kb on + strand, within SGL_RS17470at 3378.453 kb on + strand, within SGL_RS17470at 3378.470 kb on + strand, within SGL_RS17470at 3378.587 kb on + strand, within SGL_RS17470at 3378.618 kb on + strand, within SGL_RS17470at 3378.626 kb on - strand, within SGL_RS17470at 3378.833 kb on + strand, within SGL_RS17470at 3378.841 kb on - strand, within SGL_RS17470at 3378.965 kb on + strand, within SGL_RS17470at 3379.021 kb on + strandat 3379.114 kb on + strandat 3379.122 kb on - strandat 3379.170 kb on + strand, within SGL_RS17475at 3379.180 kb on - strand, within SGL_RS17475at 3379.300 kb on + strand, within SGL_RS17475at 3379.331 kb on + strand, within SGL_RS17475at 3379.438 kb on + strand, within SGL_RS17475at 3379.482 kb on + strand, within SGL_RS17475at 3379.573 kb on - strand, within SGL_RS17475at 3379.621 kb on + strand, within SGL_RS17475at 3379.633 kb on + strand, within SGL_RS17475at 3379.640 kb on - strand, within SGL_RS17475at 3379.641 kb on - strand, within SGL_RS17475at 3379.649 kb on + strand, within SGL_RS17475at 3379.802 kb on - strandat 3379.856 kb on + strandat 3379.900 kb on + strandat 3380.007 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 15 uM
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3,377,508 + +0.0
3,377,508 + +0.3
3,377,513 + +0.1
3,377,788 + +0.1
3,377,796 + -0.2
3,377,890 + -0.3
3,377,903 - -1.8
3,377,929 + SGL_RS17465 0.15 -0.6
3,377,929 + SGL_RS17465 0.15 -0.6
3,378,012 + SGL_RS17465 0.35 +0.1
3,378,043 - SGL_RS17465 0.42 -0.7
3,378,054 - SGL_RS17465 0.45 +0.0
3,378,066 + SGL_RS17465 0.48 -0.8
3,378,098 - SGL_RS17465 0.56 -0.3
3,378,166 + SGL_RS17465 0.72 -0.3
3,378,208 + SGL_RS17465 0.82 -0.5
3,378,224 - SGL_RS17465 0.86 -0.3
3,378,366 + SGL_RS17470 0.15 -3.8
3,378,392 + SGL_RS17470 0.18 -2.7
3,378,453 + SGL_RS17470 0.26 -4.1
3,378,470 + SGL_RS17470 0.28 -2.5
3,378,587 + SGL_RS17470 0.42 -4.1
3,378,618 + SGL_RS17470 0.46 -3.2
3,378,626 - SGL_RS17470 0.47 -3.2
3,378,833 + SGL_RS17470 0.73 -0.1
3,378,841 - SGL_RS17470 0.74 -2.4
3,378,965 + SGL_RS17470 0.89 -1.1
3,379,021 + -3.2
3,379,114 + +0.6
3,379,122 - -0.0
3,379,170 + SGL_RS17475 0.10 -0.2
3,379,180 - SGL_RS17475 0.12 +0.8
3,379,300 + SGL_RS17475 0.30 +0.4
3,379,331 + SGL_RS17475 0.34 +1.6
3,379,438 + SGL_RS17475 0.50 -0.1
3,379,482 + SGL_RS17475 0.57 +0.5
3,379,573 - SGL_RS17475 0.71 -0.1
3,379,621 + SGL_RS17475 0.78 -0.1
3,379,633 + SGL_RS17475 0.80 +0.4
3,379,640 - SGL_RS17475 0.81 +0.3
3,379,641 - SGL_RS17475 0.81 +0.6
3,379,649 + SGL_RS17475 0.82 +0.1
3,379,802 - +0.2
3,379,856 + +0.1
3,379,900 + -0.1
3,380,007 - +0.2

Or see this region's nucleotide sequence