Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16360

Experiment: Zinc 15 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16350 and SGL_RS16355 are separated by 80 nucleotidesSGL_RS16355 and SGL_RS16360 are separated by 359 nucleotidesSGL_RS16360 and SGL_RS16365 are separated by 100 nucleotidesSGL_RS16365 and SGL_RS16370 are separated by 88 nucleotides SGL_RS16350: SGL_RS16350 - DUF1257 domain-containing protein, at 3,115,973 to 3,116,359 _RS16350 SGL_RS16355: SGL_RS16355 - DUF2997 domain-containing protein, at 3,116,440 to 3,116,682 _RS16355 SGL_RS16360: SGL_RS16360 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 3,117,042 to 3,118,091 _RS16360 SGL_RS16365: SGL_RS16365 - PetM family cytochrome b6-f complex subunit 7, at 3,118,192 to 3,118,302 _RS16365 SGL_RS16370: SGL_RS16370 - tRNA guanosine(34) transglycosylase Tgt, at 3,118,391 to 3,119,515 _RS16370 Position (kb) 3117 3118 3119Strain fitness (log2 ratio) -3 -2 -1 0 1at 3116.053 kb on - strand, within SGL_RS16350at 3116.090 kb on - strand, within SGL_RS16350at 3116.140 kb on + strand, within SGL_RS16350at 3116.141 kb on + strand, within SGL_RS16350at 3116.193 kb on - strand, within SGL_RS16350at 3116.247 kb on - strand, within SGL_RS16350at 3116.252 kb on - strand, within SGL_RS16350at 3116.279 kb on + strand, within SGL_RS16350at 3116.321 kb on - strandat 3116.476 kb on - strand, within SGL_RS16355at 3116.548 kb on + strand, within SGL_RS16355at 3116.628 kb on + strand, within SGL_RS16355at 3116.654 kb on - strand, within SGL_RS16355at 3116.850 kb on + strandat 3116.852 kb on + strandat 3116.889 kb on + strandat 3116.942 kb on + strandat 3116.950 kb on - strandat 3117.134 kb on - strandat 3117.260 kb on - strand, within SGL_RS16360at 3117.460 kb on + strand, within SGL_RS16360at 3117.500 kb on - strand, within SGL_RS16360at 3117.547 kb on + strand, within SGL_RS16360at 3117.555 kb on - strand, within SGL_RS16360at 3117.555 kb on - strand, within SGL_RS16360at 3117.583 kb on - strand, within SGL_RS16360at 3117.886 kb on - strand, within SGL_RS16360at 3117.944 kb on + strand, within SGL_RS16360at 3117.953 kb on - strand, within SGL_RS16360at 3118.076 kb on + strandat 3118.101 kb on + strandat 3118.131 kb on - strandat 3118.215 kb on + strand, within SGL_RS16365at 3118.252 kb on + strand, within SGL_RS16365at 3118.258 kb on + strand, within SGL_RS16365at 3118.263 kb on + strand, within SGL_RS16365at 3118.330 kb on - strandat 3118.330 kb on - strandat 3118.330 kb on - strandat 3118.453 kb on - strandat 3118.537 kb on - strand, within SGL_RS16370at 3118.568 kb on + strand, within SGL_RS16370at 3118.582 kb on + strand, within SGL_RS16370at 3118.582 kb on + strand, within SGL_RS16370at 3118.707 kb on - strand, within SGL_RS16370at 3118.769 kb on - strand, within SGL_RS16370at 3118.829 kb on - strand, within SGL_RS16370at 3118.931 kb on - strand, within SGL_RS16370at 3118.950 kb on + strand, within SGL_RS16370at 3118.968 kb on - strand, within SGL_RS16370at 3119.024 kb on + strand, within SGL_RS16370at 3119.024 kb on + strand, within SGL_RS16370at 3119.025 kb on + strand, within SGL_RS16370at 3119.025 kb on + strand, within SGL_RS16370at 3119.032 kb on - strand, within SGL_RS16370at 3119.032 kb on - strand, within SGL_RS16370at 3119.032 kb on - strand, within SGL_RS16370at 3119.032 kb on - strand, within SGL_RS16370at 3119.068 kb on + strand, within SGL_RS16370

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 15 uM
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3,116,053 - SGL_RS16350 0.21 -0.4
3,116,090 - SGL_RS16350 0.30 -0.1
3,116,140 + SGL_RS16350 0.43 +0.1
3,116,141 + SGL_RS16350 0.43 -0.2
3,116,193 - SGL_RS16350 0.57 +0.0
3,116,247 - SGL_RS16350 0.71 +0.0
3,116,252 - SGL_RS16350 0.72 +0.0
3,116,279 + SGL_RS16350 0.79 -0.4
3,116,321 - -0.2
3,116,476 - SGL_RS16355 0.15 -0.2
3,116,548 + SGL_RS16355 0.44 -0.2
3,116,628 + SGL_RS16355 0.77 -0.3
3,116,654 - SGL_RS16355 0.88 +0.2
3,116,850 + +0.0
3,116,852 + +0.1
3,116,889 + +0.1
3,116,942 + +1.6
3,116,950 - +0.1
3,117,134 - -2.4
3,117,260 - SGL_RS16360 0.21 -2.0
3,117,460 + SGL_RS16360 0.40 -2.3
3,117,500 - SGL_RS16360 0.44 -2.6
3,117,547 + SGL_RS16360 0.48 -3.7
3,117,555 - SGL_RS16360 0.49 +0.3
3,117,555 - SGL_RS16360 0.49 -1.6
3,117,583 - SGL_RS16360 0.52 -1.0
3,117,886 - SGL_RS16360 0.80 -0.6
3,117,944 + SGL_RS16360 0.86 -1.0
3,117,953 - SGL_RS16360 0.87 -0.4
3,118,076 + +0.1
3,118,101 + -0.2
3,118,131 - +0.5
3,118,215 + SGL_RS16365 0.21 +0.3
3,118,252 + SGL_RS16365 0.54 +0.3
3,118,258 + SGL_RS16365 0.59 +0.4
3,118,263 + SGL_RS16365 0.64 +0.5
3,118,330 - +0.1
3,118,330 - +0.1
3,118,330 - +0.2
3,118,453 - -0.0
3,118,537 - SGL_RS16370 0.13 +0.2
3,118,568 + SGL_RS16370 0.16 +0.3
3,118,582 + SGL_RS16370 0.17 +0.2
3,118,582 + SGL_RS16370 0.17 +0.5
3,118,707 - SGL_RS16370 0.28 +0.0
3,118,769 - SGL_RS16370 0.34 +0.3
3,118,829 - SGL_RS16370 0.39 -0.0
3,118,931 - SGL_RS16370 0.48 -0.1
3,118,950 + SGL_RS16370 0.50 +0.1
3,118,968 - SGL_RS16370 0.51 +0.3
3,119,024 + SGL_RS16370 0.56 +0.2
3,119,024 + SGL_RS16370 0.56 +0.1
3,119,025 + SGL_RS16370 0.56 +0.1
3,119,025 + SGL_RS16370 0.56 -0.0
3,119,032 - SGL_RS16370 0.57 +0.6
3,119,032 - SGL_RS16370 0.57 +0.3
3,119,032 - SGL_RS16370 0.57 +0.4
3,119,032 - SGL_RS16370 0.57 +0.6
3,119,068 + SGL_RS16370 0.60 +0.1

Or see this region's nucleotide sequence