Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15785

Experiment: Zinc 15 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15780 and SGL_RS15785 are separated by 156 nucleotidesSGL_RS15785 and SGL_RS15790 are separated by 111 nucleotidesSGL_RS15790 and SGL_RS15795 are separated by 187 nucleotides SGL_RS15780: SGL_RS15780 - HAMP domain-containing sensor histidine kinase, at 2,990,525 to 2,991,898 _RS15780 SGL_RS15785: SGL_RS15785 - ParA family protein, at 2,992,055 to 2,992,690 _RS15785 SGL_RS15790: SGL_RS15790 - hypothetical protein, at 2,992,802 to 2,993,323 _RS15790 SGL_RS15795: SGL_RS15795 - hypothetical protein, at 2,993,511 to 2,994,062 _RS15795 Position (kb) 2992 2993Strain fitness (log2 ratio) -3 -2 -1 0 1at 2991.156 kb on - strand, within SGL_RS15780at 2991.645 kb on - strand, within SGL_RS15780at 2991.679 kb on - strand, within SGL_RS15780at 2991.681 kb on + strand, within SGL_RS15780at 2991.778 kb on - strandat 2991.823 kb on + strandat 2991.841 kb on - strandat 2991.943 kb on + strandat 2991.987 kb on - strandat 2992.035 kb on + strandat 2992.035 kb on + strandat 2992.035 kb on + strandat 2992.043 kb on - strandat 2992.079 kb on + strandat 2992.081 kb on + strandat 2992.127 kb on - strand, within SGL_RS15785at 2992.235 kb on - strand, within SGL_RS15785at 2992.286 kb on - strand, within SGL_RS15785at 2992.316 kb on + strand, within SGL_RS15785at 2992.439 kb on + strand, within SGL_RS15785at 2992.441 kb on + strand, within SGL_RS15785at 2992.463 kb on - strand, within SGL_RS15785at 2992.500 kb on - strand, within SGL_RS15785at 2992.544 kb on + strand, within SGL_RS15785at 2992.594 kb on - strand, within SGL_RS15785at 2992.596 kb on + strand, within SGL_RS15785at 2992.602 kb on + strand, within SGL_RS15785at 2992.828 kb on + strandat 2992.852 kb on + strandat 2993.012 kb on - strand, within SGL_RS15790at 2993.086 kb on - strand, within SGL_RS15790at 2993.233 kb on - strand, within SGL_RS15790at 2993.233 kb on - strand, within SGL_RS15790at 2993.239 kb on + strand, within SGL_RS15790at 2993.239 kb on + strand, within SGL_RS15790at 2993.239 kb on + strand, within SGL_RS15790at 2993.247 kb on - strand, within SGL_RS15790at 2993.247 kb on - strand, within SGL_RS15790at 2993.247 kb on - strand, within SGL_RS15790at 2993.247 kb on - strand, within SGL_RS15790at 2993.247 kb on - strand, within SGL_RS15790at 2993.247 kb on - strand, within SGL_RS15790at 2993.247 kb on - strand, within SGL_RS15790at 2993.296 kb on - strandat 2993.442 kb on + strandat 2993.452 kb on + strandat 2993.472 kb on + strandat 2993.581 kb on - strand, within SGL_RS15795at 2993.591 kb on - strand, within SGL_RS15795at 2993.601 kb on + strand, within SGL_RS15795at 2993.601 kb on + strand, within SGL_RS15795at 2993.609 kb on - strand, within SGL_RS15795at 2993.611 kb on + strand, within SGL_RS15795at 2993.663 kb on - strand, within SGL_RS15795

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 15 uM
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2,991,156 - SGL_RS15780 0.46 -0.1
2,991,645 - SGL_RS15780 0.82 +0.7
2,991,679 - SGL_RS15780 0.84 -0.1
2,991,681 + SGL_RS15780 0.84 +0.1
2,991,778 - +0.2
2,991,823 + +0.2
2,991,841 - +0.0
2,991,943 + +0.5
2,991,987 - -0.3
2,992,035 + -1.5
2,992,035 + -3.0
2,992,035 + -1.5
2,992,043 - -2.0
2,992,079 + -1.7
2,992,081 + -2.0
2,992,127 - SGL_RS15785 0.11 -1.9
2,992,235 - SGL_RS15785 0.28 -1.8
2,992,286 - SGL_RS15785 0.36 -2.3
2,992,316 + SGL_RS15785 0.41 -2.8
2,992,439 + SGL_RS15785 0.60 -1.7
2,992,441 + SGL_RS15785 0.61 -2.2
2,992,463 - SGL_RS15785 0.64 -2.1
2,992,500 - SGL_RS15785 0.70 -2.8
2,992,544 + SGL_RS15785 0.77 -1.5
2,992,594 - SGL_RS15785 0.85 -1.5
2,992,596 + SGL_RS15785 0.85 -1.7
2,992,602 + SGL_RS15785 0.86 -1.7
2,992,828 + -1.3
2,992,852 + -0.7
2,993,012 - SGL_RS15790 0.40 -2.3
2,993,086 - SGL_RS15790 0.54 -1.9
2,993,233 - SGL_RS15790 0.83 -1.8
2,993,233 - SGL_RS15790 0.83 -2.1
2,993,239 + SGL_RS15790 0.84 -1.7
2,993,239 + SGL_RS15790 0.84 -2.8
2,993,239 + SGL_RS15790 0.84 -2.0
2,993,247 - SGL_RS15790 0.85 -2.6
2,993,247 - SGL_RS15790 0.85 -1.6
2,993,247 - SGL_RS15790 0.85 -1.0
2,993,247 - SGL_RS15790 0.85 -1.8
2,993,247 - SGL_RS15790 0.85 -1.9
2,993,247 - SGL_RS15790 0.85 -1.7
2,993,247 - SGL_RS15790 0.85 -1.7
2,993,296 - -3.2
2,993,442 + -0.3
2,993,452 + +0.0
2,993,472 + +0.1
2,993,581 - SGL_RS15795 0.13 +1.2
2,993,591 - SGL_RS15795 0.14 +0.1
2,993,601 + SGL_RS15795 0.16 -0.1
2,993,601 + SGL_RS15795 0.16 +0.2
2,993,609 - SGL_RS15795 0.18 -0.1
2,993,611 + SGL_RS15795 0.18 -0.9
2,993,663 - SGL_RS15795 0.28 -0.3

Or see this region's nucleotide sequence