Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15700

Experiment: Zinc 15 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15695 and SGL_RS15700 are separated by 274 nucleotidesSGL_RS15700 and SGL_RS15705 are separated by 47 nucleotides SGL_RS15695: SGL_RS15695 - ammonium transporter, at 2,969,677 to 2,971,200 _RS15695 SGL_RS15700: SGL_RS15700 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 2,971,475 to 2,972,167 _RS15700 SGL_RS15705: SGL_RS15705 - hypothetical protein, at 2,972,215 to 2,973,222 _RS15705 Position (kb) 2971 2972 2973Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2970.485 kb on + strand, within SGL_RS15695at 2970.534 kb on + strand, within SGL_RS15695at 2970.555 kb on - strand, within SGL_RS15695at 2970.652 kb on + strand, within SGL_RS15695at 2970.693 kb on - strand, within SGL_RS15695at 2970.771 kb on - strand, within SGL_RS15695at 2970.876 kb on - strand, within SGL_RS15695at 2970.932 kb on + strand, within SGL_RS15695at 2970.933 kb on + strand, within SGL_RS15695at 2970.933 kb on + strand, within SGL_RS15695at 2970.940 kb on - strand, within SGL_RS15695at 2971.582 kb on + strand, within SGL_RS15700at 2971.631 kb on + strand, within SGL_RS15700at 2971.643 kb on + strand, within SGL_RS15700at 2971.676 kb on + strand, within SGL_RS15700at 2971.683 kb on + strand, within SGL_RS15700at 2971.701 kb on + strand, within SGL_RS15700at 2971.811 kb on - strand, within SGL_RS15700at 2971.839 kb on + strand, within SGL_RS15700at 2971.917 kb on - strand, within SGL_RS15700at 2971.977 kb on - strand, within SGL_RS15700at 2972.008 kb on - strand, within SGL_RS15700at 2972.046 kb on - strand, within SGL_RS15700at 2972.114 kb on - strandat 2972.212 kb on + strandat 2972.212 kb on + strandat 2972.254 kb on + strandat 2972.262 kb on - strandat 2972.268 kb on - strandat 2972.309 kb on - strandat 2972.443 kb on + strand, within SGL_RS15705at 2972.527 kb on - strand, within SGL_RS15705at 2972.540 kb on + strand, within SGL_RS15705at 2972.540 kb on + strand, within SGL_RS15705at 2972.540 kb on + strand, within SGL_RS15705at 2972.596 kb on - strand, within SGL_RS15705at 2972.596 kb on - strand, within SGL_RS15705at 2972.596 kb on - strand, within SGL_RS15705at 2972.630 kb on - strand, within SGL_RS15705at 2972.634 kb on + strand, within SGL_RS15705at 2972.637 kb on - strand, within SGL_RS15705at 2972.637 kb on - strand, within SGL_RS15705at 2972.660 kb on - strand, within SGL_RS15705at 2972.689 kb on + strand, within SGL_RS15705at 2972.702 kb on + strand, within SGL_RS15705at 2972.702 kb on + strand, within SGL_RS15705at 2972.702 kb on + strand, within SGL_RS15705at 2972.710 kb on - strand, within SGL_RS15705at 2972.715 kb on + strand, within SGL_RS15705at 2972.723 kb on - strand, within SGL_RS15705at 2972.738 kb on - strand, within SGL_RS15705at 2972.742 kb on + strand, within SGL_RS15705at 2972.785 kb on - strand, within SGL_RS15705at 2972.885 kb on - strand, within SGL_RS15705at 2972.913 kb on + strand, within SGL_RS15705at 2972.961 kb on - strand, within SGL_RS15705at 2973.034 kb on - strand, within SGL_RS15705at 2973.058 kb on + strand, within SGL_RS15705at 2973.134 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 15 uM
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2,970,485 + SGL_RS15695 0.53 -1.5
2,970,534 + SGL_RS15695 0.56 -1.2
2,970,555 - SGL_RS15695 0.58 -2.4
2,970,652 + SGL_RS15695 0.64 -2.0
2,970,693 - SGL_RS15695 0.67 -0.5
2,970,771 - SGL_RS15695 0.72 -1.3
2,970,876 - SGL_RS15695 0.79 -1.4
2,970,932 + SGL_RS15695 0.82 -1.9
2,970,933 + SGL_RS15695 0.82 -0.8
2,970,933 + SGL_RS15695 0.82 -0.4
2,970,940 - SGL_RS15695 0.83 -1.2
2,971,582 + SGL_RS15700 0.15 -2.0
2,971,631 + SGL_RS15700 0.23 -2.4
2,971,643 + SGL_RS15700 0.24 -1.9
2,971,676 + SGL_RS15700 0.29 -4.5
2,971,683 + SGL_RS15700 0.30 -2.6
2,971,701 + SGL_RS15700 0.33 -2.4
2,971,811 - SGL_RS15700 0.48 -3.2
2,971,839 + SGL_RS15700 0.53 -3.2
2,971,917 - SGL_RS15700 0.64 -2.8
2,971,977 - SGL_RS15700 0.72 -2.1
2,972,008 - SGL_RS15700 0.77 -1.6
2,972,046 - SGL_RS15700 0.82 -4.0
2,972,114 - -0.1
2,972,212 + +0.3
2,972,212 + +0.5
2,972,254 + -0.1
2,972,262 - +0.1
2,972,268 - -0.5
2,972,309 - +0.9
2,972,443 + SGL_RS15705 0.23 -0.5
2,972,527 - SGL_RS15705 0.31 -0.0
2,972,540 + SGL_RS15705 0.32 +0.1
2,972,540 + SGL_RS15705 0.32 -0.1
2,972,540 + SGL_RS15705 0.32 +0.1
2,972,596 - SGL_RS15705 0.38 -0.1
2,972,596 - SGL_RS15705 0.38 -0.2
2,972,596 - SGL_RS15705 0.38 +0.3
2,972,630 - SGL_RS15705 0.41 +1.2
2,972,634 + SGL_RS15705 0.42 +0.2
2,972,637 - SGL_RS15705 0.42 +0.3
2,972,637 - SGL_RS15705 0.42 -0.1
2,972,660 - SGL_RS15705 0.44 -0.1
2,972,689 + SGL_RS15705 0.47 -0.0
2,972,702 + SGL_RS15705 0.48 -0.5
2,972,702 + SGL_RS15705 0.48 -0.2
2,972,702 + SGL_RS15705 0.48 +1.6
2,972,710 - SGL_RS15705 0.49 +0.6
2,972,715 + SGL_RS15705 0.50 +0.1
2,972,723 - SGL_RS15705 0.50 +0.1
2,972,738 - SGL_RS15705 0.52 -0.0
2,972,742 + SGL_RS15705 0.52 -0.1
2,972,785 - SGL_RS15705 0.57 -0.4
2,972,885 - SGL_RS15705 0.66 +0.1
2,972,913 + SGL_RS15705 0.69 -0.1
2,972,961 - SGL_RS15705 0.74 +1.1
2,973,034 - SGL_RS15705 0.81 -0.3
2,973,058 + SGL_RS15705 0.84 -0.0
2,973,134 - -0.4

Or see this region's nucleotide sequence